barSeed - Barley Seed Development Database

Probe CUST_26143_PI390587928

Source Contig U35_27161

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26143_PI390587928	Hv_44K_v2	TACCTGCTGAGCTTGGGAATGCTGACGGTCTCATCCATGCTGCAAACGTCGCACCTTCGT	349	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372691	1659	2e-24	321 - 380	100	60 / 60	plus	ABC07898
Harvest21	ABC32255	584	3e-25	350 - 409	100	60 / 60	plus
Harvest35	U35_27161	584	3e-25	350 - 409	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_27161 584 Hv_44K_v2
GGGCACACACTGAATAGATCACGCACCTGCACGGGCACCACCTCCGGCCCAGAGGCGAAG
GTGCGAAGCGATGGAGTCAGGCGAGCCACTCCCACGCCACGACGGCCGCGGTGGCTGGCG
CGCCGCGCTCTTCATCGTCGCCGTCGGCTTCCTGGAGCGCATCGGGTTCACCGGCGTGGG
GGGCAACCTGATCACGTACCTGACCGGCCCGCTGGGCATGTCCACCGCAGCCGCCGCCGC
CGGCGTGAACGCCTGGTCCGGGACCGTGCTGGTGCTGCCGCTCGTCGGCGCGCTCGCCGC
CGACTCGCGCCTCGGCCGGTACCGCGCGGTCCTGATCGCCGGCGTGCTCTACCTGCTGAG
CTTGGGAATGCTGACGGTCTCATCCATGCTGCAAACGTCGCACCTTCGTCCTGCCGGCTG
CCACAACACAACCAGCACCTGCTCGCCGCCGCCCTCGGCTTCATCGCCTGCCCGGATCGC
CTTCTTCTACACCGCGGTCTACCTGCTAGCGCTGGCGCAGGGCTTCCACATGCCGTGTTC
GGAAGCTCTGGGCGCGGACCAGTTCGATCCCAGCCTGAGTGCGT

Homology of Contig U35_27161 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65169.1	542	1e-57	protein\|proton-dependent oligopeptide transport, putative, expressed
Brachypodium v1_2	Bradi2g56380.1	540	2e-60
Arabidopsis v10	None