barSeed - Barley Seed Development Database

Probe CUST_25997_PI390587928

Source Contig U35_50459

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25997_PI390587928	Hv_44K_v2	ACCCTGCTCACTGCATTTGGTTCGTAGTGAATAAATGATGGAGCTTGTGCATCTAAAAAA	95	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81831.1	1035	3e-21	965 - 1018	100	54 / 54	plus	ABC12855 ABC48290 ABC52603
JLOC1	JLOC1_54433.1	1075	2e-21	965 - 1018	100	54 / 54	plus
Harvest21	ABC52603	166	3e-25	96 - 155	100	60 / 60	plus	ABC52603
Harvest21	ABC12855	896	6e-22	818 - 871	100	54 / 54	plus	ABC12855
Harvest35	U35_50459	166	3e-25	96 - 155	100	60 / 60	plus

Contig Sequence (166 bp)

>U35_50459 166 Hv_44K_v2
AGGGCGTGTTTGGCGTTTCAATGCCCAACTAGTAGTAGAATATAAGGATCGCGCGTAGGC
GTTTTTTCATTCTTTCTTATGTTACTTCTCTATGTACCCTGCTCACTGCATTTGGTTCGT
AGTGAATAAATGATGGAGCTTGTGCATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_50459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None