barSeed - Barley Seed Development Database

Probe CUST_25959_PI390587928

Source Contig U35_36527

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25959_PI390587928	Hv_44K_v2	AACAATGGGCGGCACTGAAATCGGGATAGACGTCACTAATTCAGCACAGAAGATATGGTT	359	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55054.1	1706	2e-24	888 - 947	100	60 / 60	minus	ABC14547 ABC26356
JLOC1	JLOC1_35483.1	1776	8e-25	760 - 819	100	60 / 60	plus
Harvest21	ABC31595	491	3e-25	360 - 419	100	60 / 60	plus
Harvest35	U35_36527	491	3e-25	360 - 419	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_36527 491 Hv_44K_v2
GCCTACATGGAGGCCGTCGAGTCCTACCTAGGTAGCAGGCAGGTGTGGTTTTGTGGCCTC
TGCCAGTACGTTAATCTCGTTGGAACTGCATTCGGGTACACCATTACAGCATCGATCAGT
GCCGCGGCTTTGTACAAGGCCGACTGCTTCCACAAGAACGGCCACTCTGCCGACTGCGGC
GTGTACACTACCATGTACATGGTCGTGTTTGGGATCTCCCAGATCGTCTTCTCCCAGCTC
CCCAACCTCCACGAGATGGCCTGGCTGTCGATCCTCGCCGCAGTCATGTCCTTCTCCTAC
TCCGCGATCGGCGTTGGCCTCGCCTTGGCACAGACCATATCAGGTCCTACTGGCAAGACA
ACAATGGGCGGCACTGAAATCGGGATAGACGTCACTAATTCAGCACAGAAGATATGGTTG
ACGTTGCAAGCGCTCGGCAACATTGCATTCGCCTACTCATACTCCATGGTTCTCATAGAA
ATCCAGGACAC

Homology of Contig U35_36527 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12330.1	485	1e-87	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi1g45180.1	489	5e-99
Arabidopsis v10	AT1G58360.1	485	4e-62	\| Symbols: AAP1, NAT2 \| amino acid permease 1 \| chr1:21676623-21680313 FORWARD LENGTH=485