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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_25919_PI390587928Hv_44K_v2CTTCTGTATGTCGATTGGCCTTCTAAATTTCATAGTTGTGTTATAAAAGTCACAGTAGGC3GeneList: lightcyan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8121.5381.9072.0890.7510.612
Raw 58.306182.509186.267320.72041.18035.859



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_4373.139983e-211521 - 15779857 / 58plus ABC21521
MLOCMLOC_4372.125743e-211626 - 16829857 / 58plus ABC21521
MLOCMLOC_4372.320553e-211907 - 19639857 / 58plus None
MLOCMLOC_4372.423123e-211623 - 16799857 / 58plus ABC21521
JLOC1JLOC1_2709.339852e-212417 - 24739857 / 58minus
JLOC1JLOC1_2709.238762e-212308 - 23649857 / 58minus
JLOC1JLOC1_2709.125212e-21953 - 10099857 / 58minus
JLOC1JLOC1_2708.218062e-211616 - 16729857 / 58plus
JLOC1JLOC1_2708.118152e-211625 - 16819857 / 58plus
Harvest21ABC503515833e-254 - 6310060 / 60minus
Harvest35U35_485145833e-254 - 6310060 / 60minus



Contig Sequence (583 bp)

>U35_48514 583 Hv_44K_v2
AATGCCTACTGTGACTTTTATAACACAACTATGAAATTTAGAAGGCCAATCGACATACAG
AAGAAGGGTATCTTGAAGTTGAACGGGTTTTCCGAGATGGCTCCATCCTGTGGTTCGGTT
GTTTTTGATGAATGTACATGAGAAAATATTCCTAAAATTTTAACCTGACATCTAGGATGG
TTCGAAATTCAAGCAACCAATCACATGCCTTTTCCTAGGATAACTTGGTAAGCAACTGGA
CACATTCTGCTGTGAAGCAGTTCAGAACAGAGCACCCTATCAAGAAGCTACTCGCAAAAA
GCTTAGCTCTGGCTTGCTCGATGTAGCTATTTCTGAACTGCTTTCAGAACCTGTATCTGG
CTTGCTTGCAGAGTTTGAATTGGGTAATATCCTGATTTTTTTCTCGGAAGCGCTAACTGC
TTCCAAAGTACTTAACACTGGCTTGCCTGAACTAGCCATTTCCGAATTGTTTGCAGAATC
TCTACTTGACCCTCTTGCAGAGTTTGAGGTTTGTCCTCTCCTGGATTTATTGGCGGAGGT
GCCAAATGCTTCCAGAGCATCAAGGAAGAACTTCTTATTTGGA



Homology of Contig U35_48514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None