barSeed - Barley Seed Development Database

Probe CUST_25818_PI390587928

Source Contig U35_17727

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25818_PI390587928	Hv_44K_v2	TTTGCTTGCCGTATATAGCTTTCCGTCCTTGTAAGCATAATCACGTGTGTCCTTTGGTGA	574	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248158.1	1834	2e-24	1489 - 1548	100	60 / 60	plus	ABC10458 ABC10459 ABC10460 ABC12425 ABC38132
MLOC	MLOC_46789.1	354	7e-23	123 - 182	98	59 / 60	minus	ABC10458 ABC10460
Harvest35	U35_17727	739	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (739 bp)

>U35_17727 739 Hv_44K_v2
GCACAAGGGCTTCCCTAATCATATGCCCAATGACTCAGAAGGAGGAAATGCCACCAATGC
TGAACTAGTGGCTTTAGATCCTTTAGCCAGAGTACCGCCTAAAAGTTCTAATTGCTGCTC
AGAGATTGCTGGTGCTTTTCAAAGTGTTGAACCCTTAAGTTATCAAAGTGCTCCAGTGGC
TTCATTGAAGAATCAACAATACTTGGAAAGAAATGAGCACATCACATTGACTCAGAAGGC
AGTATCAAATAAAAATGTACCATCTTCAATTCACTCGGATGTGCAATCTCCGAAAAAAAC
TGTAGGTTCAGCAAAGAAGCAGAGATCTGCAAAGCAAGGGTTGGGGCGTCCTACTAGATT
GAATTTAGCTCCACATGCTTGGCTTACTCGTTCTAGGGTCCGGGCATTATCTATTTCCAC
ACCCGAGTCTCTCAAAATGAGAAGGACCAGATCAGGTCGAGTGATAGTACCTCAATTGGA
TTCAACAAGAAGTTGGGTTGTCTATGACAGGGATCGGTTCATTTCAGGCGTTGCTCATAC
GCATAATGGTTTGTTGAGAAGCTCCTGTGCCAAATTTGCTTGCCGTATATAGCTTTCCGT
CCTTGTAAGCATAATCACGTGTGTCCTTTGGTGACAGGGGGCTAACTTGGCTAACTGGCA
AGTTAGCGAGACTTGCATGCAAGTCCAGAAGGTAACGACTTGAGTTTCGACATGGAAAGT
TCCAGGCTCCAGCACCAAG

Homology of Contig U35_17727 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None