barSeed - Barley Seed Development Database

Probe CUST_25780_PI390587928

Source Contig U35_17747

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25780_PI390587928	Hv_44K_v2	AGGGGTTTCAACTTGAGCCATTGGTGCCAAGCTAGTTAAAATTTCTGGATTTTTTGCTCT	1098	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.257	1.569	1.374	0.983	0.389	0.425
Raw	752.861	1455.236	1105.458	1233.496	173.519	203.092

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_834.1	706	2e-24	135 - 194	100	60 / 60	minus	ABC08175
JLOC1	JLOC1_514.1	1452	8e-25	1335 - 1394	100	60 / 60	plus
Harvest21	ABC08175	1187	3e-25	1099 - 1158	100	60 / 60	plus	ABC08175
Harvest35	U35_17747	1187	3e-25	1099 - 1158	100	60 / 60	plus

Contig Sequence (1187 bp)

>U35_17747 1187 Hv_44K_v2
GCTCCTCCTCCCAGATCTCGCACCACACGGCCGCGCGCACCGGAGACACCTAGCGAGACG
GTTGCGAGAGGTAAAACAGCAAAAGAGAAGAGGCCACCGCAGCTCGCGTACCGGCGGTGT
GTGGGTGGCGGCGTCCGTCACGCGTCGGTGTATCGGGTGATGGACGCTGGCGGCGGGGGC
CTAGGCGGGTTCCAGTGGACCGCGGAGGAGGCCTCGACGATCGGGGGCATCGCGACGGTG
TCGCTGCTGCACTCCTTCATCCCCACGCACTGGCTCCCTTTCTCCATCGTTGGGCGCGCC
CAGCGCTGGCCGCTCTCCCGCACCCTCCTCGTCACTGCCTTTGGAGCCGTCCTTCATGTT
GTATCGACCGCTCTTCTAGGGATAACTGCAGTTACTATGGCAAATACTATAGCGGGCGAG
GAAACAGTGCATAAACTTGCCTCGCTGTTGCTAATATTTCTTGGAGCAGGTTACATTCTG
TTGTTTGTGTTAGGAAAAGGGGGTCATAGCCATGCTCATAATCATCCAATGGAGAAGATG
GCAGTCGCTGGTCTTGTACTTGTACCAGCATTATCACCCTGTGCAACTACTCTTCCAGTG
TTTCTTGCTGTTGGCAACTCATCCTCGATGATGTTTCTTGCAATCATTGTACTTCTCTTC
AGTACCATCACAGTGATGACGTCCCTGGTGGCCCTCTCATTTTATGGTGCTAGCCAGATC
AAGTTTCACTGGGTGGAACGCTATGACAAGGTCCTAGTTGGCTCGGTGCTGTGCCTTGTT
GGGGTTCTGACATATGTGTTCCATCACCATGATGGTGACCAGCATTCTCTCCATGCACAC
GTGCATAGGAAACTTGTGGGTTCTTGAGAGGAATATAAATAGATGGCAAATGAAGTTCCC
TAAGTTCACTATGAAACAAATTGTCTCTTGTCATCTAACTTTTGTACGTTATTTGCTGTA
CAAGATCTGATTATCAATTGATTTGTTGGGAATCTACCAACCTCTAGATTTCCTAGGAAT
ACAGACCAGGTGAATATTTACTGGAAATTATTTTTACCAGGGATCTTTGTTTGTGCTGAT
GCAGTTTAACTGGAACAGAGGGGTTTCAACTTGAGCCATTGGTGCCAAGCTAGTTAAAAT
TTCTGGATTTTTTGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g17020.1	242	3e-142	protein\|glycosyl hydrolases family 17 protein, putative, expressed
Brachypodium v1_2	Bradi2g10670.1	236	3e-151
Arabidopsis v10	AT5G21070.1	225	4e-118	unknown protein; Has 115 Blast hits to 115 proteins in 34 species: Archae - 1; Bacteria - 36; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). \| chr5:7156356-7157490 FORWARD LENGTH=225