barSeed - Barley Seed Development Database

Probe CUST_25770_PI390587928

Source Contig U35_29729

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25770_PI390587928	Hv_44K_v2	GTGCTGCTCGTCAGGGCGCGGCTCCTGCTCCCGTGTCGATCTGAGACCCTGGAGCGGTGC	148	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77048.1	2249	2e-24	362 - 421	100	60 / 60	plus	ABC19129 ABC38504 ABC38521
MLOC	MLOC_77048.3	1241	2e-24	314 - 373	100	60 / 60	plus	None
MLOC	MLOC_77048.2	1984	2e-24	325 - 384	100	60 / 60	plus	None
JLOC1	JLOC1_51387.2	1865	8e-25	314 - 373	100	60 / 60	plus
JLOC1	JLOC1_51387.1	1799	8e-25	326 - 385	100	60 / 60	plus
Harvest21	ABC29169	208	3e-25	149 - 208	100	60 / 60	plus
Harvest35	U35_29729	208	3e-25	149 - 208	100	60 / 60	plus

Contig Sequence (208 bp)

>U35_29729 208 Hv_44K_v2
GGGGAGGGAGGCCGCCTACATCTACATCTGGCCGGAGGCGGCCATGCTCGTGCGGGAGGA
GAGAGCCTCGATGCAGATGAACCACCACCGGCCATGCTCGCGCGGGATGAGAGATGCTCG
ATGCAGAGGAAGCAGGTCGCCTTCCTCGGTGCTGCTCGTCAGGGCGCGGCTCCTGCTCCC
GTGTCGATCTGAGACCCTGGAGCGGTGC

Homology of Contig U35_29729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None