barSeed - Barley Seed Development Database

Probe CUST_25736_PI390587928

Source Contig U35_46640

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25736_PI390587928	Hv_44K_v2	AAGAGCACCTTCGACGACGACATCACGCACACCGACTCCAACGACGAGATCCTCGGCGTC	79	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74565.7	2552	7e-23	2304 - 2363	98	59 / 60	minus	ABC12572
MLOC	MLOC_74565.5	3112	7e-23	2397 - 2456	98	59 / 60	minus	ABC12572
MLOC	MLOC_74565.4	3870	7e-23	2662 - 2721	98	59 / 60	minus	ABC12572
MLOC	MLOC_74565.6	2940	7e-23	2373 - 2432	98	59 / 60	minus	ABC12572
MLOC	MLOC_74565.3	2991	7e-23	2408 - 2467	98	59 / 60	minus	ABC12572
MLOC	MLOC_74565.1	3553	7e-23	2410 - 2469	98	59 / 60	minus	ABC12572
MLOC	MLOC_74565.2	3819	7e-23	2676 - 2735	98	59 / 60	minus	ABC12572
JLOC1	JLOC1_49698.6	3035	4e-23	470 - 529	98	59 / 60	plus
JLOC1	JLOC1_49698.5	3272	4e-23	441 - 500	98	59 / 60	plus
JLOC1	JLOC1_49698.4	3218	4e-23	387 - 446	98	59 / 60	plus
JLOC1	JLOC1_49698.3	3048	4e-23	483 - 542	98	59 / 60	plus
JLOC1	JLOC1_49698.2	3275	4e-23	710 - 769	98	59 / 60	plus
JLOC1	JLOC1_49698.1	3541	4e-23	710 - 769	98	59 / 60	plus
Harvest21	ABC47010	150	3e-25	80 - 139	100	60 / 60	plus
Harvest35	U35_46640	150	3e-25	80 - 139	100	60 / 60	plus

Contig Sequence (150 bp)

>U35_46640 150 Hv_44K_v2
GCGGACGACCATGTTGCTGGCGTACCAGAGCCTGGGGGTGGTGTACGGGGACCTGAGCAT
CTCTCCGCTCTACGTCTACAAGAGCACCTTCGACGACGACATCACGCACACCGACTCCAA
CGACGAGATCCTCGGCGTCCTCTCCTTCGT

Homology of Contig U35_46640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None