barSeed - Barley Seed Development Database

Probe CUST_2571_PI390587928

Source Contig U35_15109

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2571_PI390587928	Hv_44K_v2	AAGAACTTGTTTGGCGGAAGGTTGTTTATTTGTTGCTGACGGAGGTGCTTGGACTAATGG	916	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360130	1301	2e-24	910 - 969	100	60 / 60	plus	ABC02851 ABC02852
MLOC	MLOC_18437.1	1628	2e-24	542 - 601	100	60 / 60	minus	ABC02852
JLOC1	JLOC1_12760.1	849	8e-25	414 - 473	100	60 / 60	minus
Harvest21	ABC02852	1086	3e-25	925 - 984	100	60 / 60	plus	ABC02852
Harvest35	U35_38866	667	3e-25	146 - 205	100	60 / 60	minus
Harvest35	U35_33607	720	3e-25	67 - 126	100	60 / 60	minus
Harvest35	U35_15109	1107	3e-25	917 - 976	100	60 / 60	plus

Contig Sequence (1107 bp)

>U35_15109 1107 Hv_44K_v2
GTCTCAGTGGAACAACATACGCACCGGAACTCTCAAAGCGGAAGCCTCTCTCACCGGCGA
CGACGCGCACCAGCAGCGATGGCCCGCTACGACCGAGCGATCACCGTCTTCTCCCCCGAC
GGCCACCTCTTCCAGGTTGAGTACGCCCTCGAGGCCGTCCGCAAGGGCAACGCCGCTGTC
GGCGTCCGAGGCGTCGACACCGTCGTCCTCGGTGTCGAGAAGAAGTCCACCCCCAAGCTC
CAGGACTCCAGGTCCGTGCGCAAGATCGCGAGCCTGGACACCCACGTCGCGCTGGCCTGC
GCGGGTCTGAAGGCGGACGCGCGCGTGCTTATCAACCGGGCGCGCGTCGAGTGTCAGAGC
CACCGCCTCACCGTCGAGGACCCCGTCACTGTCGAGTACATCACGCGCTACATCGCCGGC
CTGCAGCAGAAGTACACGCAGAGCGGAGGGGTGCGCCCATTCGGGCTTTCCACGCTCATA
GTTGGCTTCGACCCCTATACTGAGAAGCCCGCGCTGTACCAGACCGACCCCTCCGGCACC
TTCTCTGCCTGGAAGGCCAACGCCACCGGCCGCAACTCCAACTCCATGCGCGAGTTCCTT
GAGAAGAATTACAAGGAGACGTCCGGCAAGGAGACCATCAAGCTTACCATCCGAGCCCTT
CTTGAGGTTGTCGAGAGTGGTGGCAAGAACATTGAGATCGCTGTGATGACGCACAAAGAT
GGTCTTCGCCAACTTGAGGAAGACGAGATCGATGAGTACGTTGCTGAGATCGAAACAGAG
AAGGCTGCTGCTGAGGCTGCAAAGAAGGGTGGCCCGAAAGACACATGATGTACTAATGAT
TTAGCACAGTCGCGGCACATGGCTCCTCTAGCTCTATTTATGTTCACAGCTTGTCTGCTT
GTCTTAACTGTTTCCGAAGAACTTGTTTGGCGGAAGGTTGTTTATTTGTTGCTGACGGAG
GTGCTTGGACTAATGGGCTTGATCCCGTCATGTGCGAACTGTAAGCTTAGCTATAATGGC
CGTTACCGGGGCCGTGGATGTGAAGTGGGCTGAGTTATCCTACAACTTATTCCTAATAAA
AAAAAAAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15109 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g43540.1	320	5e-149	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi4g36440.1	250	5e-151
Arabidopsis v10	AT5G66140.1	250	3e-136	\| Symbols: PAD2 \| proteasome alpha subunit D2 \| chr5:26437445-26438677 REVERSE LENGTH=250