barSeed - Barley Seed Development Database

Probe CUST_25694_PI390587928

Source Contig U35_46668

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25694_PI390587928	Hv_44K_v2	CACGGGCTTGGCCTCCGCGCGCTTCTTCCCCAGGAACGCCGTCCACAGCGTCCAGCCCTA	403	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.586	0.637	0.895	1.179	1.263	2.080
Raw	25.308	40.341	52.101	103.576	40.293	72.220

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375294	2791	2e-24	510 - 569	100	60 / 60	plus	ABC12619 ABC15354 ABC17993
MLOC	MLOC_74035.2	2107	2e-24	2027 - 2086	100	60 / 60	minus	ABC12619 ABC17993
MLOC	MLOC_74035.1	2189	2e-24	2048 - 2107	100	60 / 60	minus	ABC12619 ABC17993
JLOC1	JLOC1_49320.3	3236	8e-25	79 - 138	100	60 / 60	plus
JLOC1	JLOC1_49320.2	3251	8e-25	79 - 138	100	60 / 60	plus
Harvest21	ABC47069	463	3e-25	404 - 463	100	60 / 60	plus
Harvest35	U35_46668	463	3e-25	404 - 463	100	60 / 60	plus

Contig Sequence (463 bp)

>U35_46668 463 Hv_44K_v2
CCTCGCCTTCCTCTCACCCGGGGTGNCCGGGGCGCCCCCTCCGCCGCGGGGACCTCGTCA
TCCGCATGGGCGGCGGCCCCCGCACCTTCCCGGGCGGCGTCTCCAAGTGGCAGTGGAAGC
GCATGCAGGCCCGGAAGGCGAAGCAGCTCCTCAAGGCCCGCCTCGCGCGCGAGCGCCAGG
GGGGGGAGATGCGCAAGCGCGCCGAGCTCCGCGACGCCGTCGTCCACCTCGAGCGGCCCT
GGGACCCCGACTCGGCCCCCGTCTCCGCCGCCGCGCTGGCGCCCACCCTCCTCTCCGTCG
CCGCCGACGACCAGCTTAAGGGGCTCGCCGACCGCTTCCACCGCCCCGGCGGCGTCGACC
TCTGGAACGACCGCGACGGGCCCCGGGTCTTCGCGTCCCCGGACACGGGCTTGGCCTCCG
CGCGCTTCTTCCCCAGGAACGCCGTCCACAGCGTCCAGCCCTA

Homology of Contig U35_46668 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35620.1	631	4e-76	protein\|expressed protein
Brachypodium v1_2	Bradi3g46140.1	568	2e-79
Arabidopsis v10	AT2G37920.1	251	2e-58	\| Symbols: emb1513 \| copper ion transmembrane transporters \| chr2:15869269-15870024 REVERSE LENGTH=251