barSeed - Barley Seed Development Database

Probe CUST_2568_PI390587928

Source Contig U35_15112

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2568_PI390587928	Hv_44K_v2	AAGATGGTTTCCTGTTGGTGAATCATCTTGTGCAGTTTATATATTTTGACCCGGTAAGGT	4290	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54105.3	792	3e-21	17 - 76	97	59 / 61	minus	ABC02848
MLOC	MLOC_54105.2	1306	3e-21	127 - 186	97	59 / 61	minus	ABC02848
JLOC1	JLOC1_34817.5	3587	2e-21	3425 - 3484	97	59 / 61	plus
JLOC1	JLOC1_34817.4	3991	2e-21	3829 - 3888	97	59 / 61	plus
JLOC1	JLOC1_34817.3	3709	2e-21	3547 - 3606	97	59 / 61	plus
JLOC1	JLOC1_34817.2	3600	2e-21	3438 - 3497	97	59 / 61	plus
Harvest21	ABC02848	4145	3e-25	4086 - 4145	100	60 / 60	plus	ABC02848
Harvest35	U35_15112	4350	3e-25	4291 - 4350	100	60 / 60	plus

Contig Sequence (4350 bp)

>U35_15112 4350 Hv_44K_v2
GCTCGCCTTCCGGCCCGCAGATCTCATCTCGCAGGTCTTTGGGGGGGATCGCGAGCCTGG
ACACCCACGTCGCGCTGGCGTGCGTGGGGCTCAAGGCGGACACGCGGGTGCTCATCAACC
GCGCGCGCGTCGAGTGCCAGAGCCACCGCTTCACCGTCGAGGACCCCATCACCGTCGAGT
ACATCACCCGCTACATCGTCGGCCTGCAGCAGAAGTACACCCAGAGCGGAGGAGTTCGTC
CGTTCGGCCTCTCCACACTCATCGTCGGCTTCGATCCGTACACGGACAAGCCCGCTCTGT
ACCAGACTGACCCCTCCGGCACCTTCTCCGCCTGGAAGGCCAACGCCACGCGGAGGAACT
CCAACTCCACGAGGGAGTTCCTGGAGAAGAACTACAAGGACACCTCCGGCAAGGAGACCA
TCAAGCTCACCATCCGAGCCCTTCTAGAGGTAACATTCCTCCTGTTATCCGTGTTGTTTG
ATGCGGTTTAATGGCGAGTAATATGCAGACTCCTGGTCCGCCTCAGCCCCCCCGGCCTCC
TATGATGGGTTCTACCGCACCACAAAATATGGGACAACCAATGCCCATGCAGTGGCCACC
AGGTCCGCCACAACAGCCTCCTCAGTTCATGCAACCAGCGCCACAACAGTATCGACCTGT
TGGTCAGGCCATGCCAGGAGTTAACATGGGCATGCCAGGGCAGATGCAACATTTTCAGCA
ACCTGGGCCACATATGCCTCATTCTGGTCATGTTCCGCCTGCATCACAAGCTGTTCCTAT
GCCATACCAGGCAGTTAGACCTATGTCATCAGCTCCTATGCAGCCACAGCAGCAAGCTGT
ATTCCCTGGTGGACATATGCCCACCATGGGCACCCCTATGCCGCCTCCTTCATATACCTA
TCAACCAACAACGGTTCCTCCTGGAGCTCAACCCTGGGGTACAGTCCCAGGTCAGGGCGC
ACCTCTTGTGTCACCAATGGTGCAGCCTGGGCATCAGTCTCTCTCAGCTTCAGTGCCCCC
AGTGAGCTCAACTGAACCTAGCTCTGCAGATTGGCAAGAACACAGTTCAGGGGATGGAAA
GAAGTACTACTACAATAAGAGGACAAAGCAATCAAGTTGGGAGAAACCTGCTGAGTTGAT
GACACCTTTGGAGCGGGCTGACGCTTCAACCGAATGGAAAGAATTTACTACAGCAGAAGG
ACGGAAGTACTATTATAACAAAGTGACAAAGCAATCCAAATGGTCTATTCCTGACGAGCT
AAGGATCGCACGCGAATTAGCAGAAAAGACATCAAATCAACAGCCTGTCCGGGAAATTGA
ATCCACTACTGTTGCCCCTGTTGGATCCACTTCTGTTTCTGTTGAGCCTTCTGTTTTACC
TGCCAAGCAGTCTTCATCTTTAGTAGGAACAGTTGCTTCAAGCGCACATGATGCGACAGC
AAACTTGCCTCCTCCTGGTGCTGCCCCGTCGTACAATGGGGATATACCTTCTTCTGGTTC
CATGCAAAATGGTGGAACAAGTGCTGCTGTGGTTGTCCCTGTTACAACGAGCACTGGGGT
TCCACAACTTGCAAGCGATGCTGGGACAAACAGAAACACTTATGGAAGTTCATCTCTACC
AAGTACTACTGACACAAAAGTTGGAGCATCTGCTGAGGATTTGGAGGAGGCCAAAAAGAC
GATGCCAACTGCAGGGAAGATCAATGTTACTCCGCTGGAGGATAAAACAATTGAAGAAGA
ACCTGTTGTTTATGCTACTAAATTGGAAGCAAAGAATGCATTCAAGTCCCTGCTTGAATC
GGCAAATGTCCAGTCTGATTGGTCATGGGATCAGGCCATGAGAGTTATTATATCTGACAA
AAGATATGGTGCTCTGAAAACTCTTGGAGAGAGAAAGCAAGCTTTCAATGAGTACTTAAA
CCAGCGGAAAAAGATTGAAGTTGAGGAGAGGCGTGTCAAGCAGAGGAAAGCACGTGATGA
TTTTCTCACAATGCTGGAAGAATGTAAGGACCTTACATCATCAATGAGATGGAGCAAAGC
AATTACTATGTTTGGGCATGATGAAAGGTTCAATGCTGTTGAACGCCCCAAGGAGCGTGA
AGATTTATTTGAGAACTATCTTGTGGAGCTACAAAAGAAGGAAAAAGCAAAGGCTGCTGA
AGAGCACAAAAGGCGCATAGCAGAATATAGAGAATTTCTTGAATCATGTGATTTCATCAA
GGCAAACACCCAGTGGCGAAAAGTTCAAGATCGGCTAGAGGATGATGAACGCTACACCCG
ACTTGAAAAGATTGACCGCTTGGATGTTTTCCAAGACTATATAAGGCATCTTGAGAAAGA
AGAGGAAGAGCAGAAGAGAATTCAGAAGGAGCAATTAAGGAGACAAGAACGGAAAAACCG
CGATGACTTTCGGAAGATGATGGAAGAACATGTTGCTGATTGTACACTTAATGCAAAAAC
TTACTGGCGTGACTACTGTTCACAGGTGAAGGATTCACGTGCTTACCTGGCAGTTGCTTC
AAACTTGTCTGGCTCGATGCCAAAAGAACTCTTTGATGATGTCATGGAGGAGCTTGATAA
ACAGTATCAAGATGATAGGGCTTTAATTAAAGATGAAGTGAAATCTGGAAAGATTCCTAT
GATGTCTTCATGGACATTAGAGGACTTCCAAGCTGCTGTTACAGAGCATGAAAAATGTAA
AGGAGTGTCGAAGATAAATATCAAGCTTATTTATGAGGACCTAATTGAAAGGCTCAAGGA
GAAGGATCTAAAGGAGGCCAAGAAGCGTCAGCGACTGGGTGATAATTTTCTAGATCTACT
GTACTCAATCAAGGAAATTACTGCTGCTTCAACATGGGATGATTCTAAATCACTATTTGA
TGATACACAGGAATACAGGGATCTGGGTGGTGAGACATATGCTAAAGAGCTTTTTGAAGA
ATATATTGTCCGCCTCAAAGAAAGGCTTAAAGAGAAAGAGCGCATGAGGGAGGAAGAGAA
GGCAAAGAAAGAGAAAGACCGTGAAGAGAGAGAAAAGAAGAAGGAGAAGGAGAAGGAGAA
GAAGGAGAAAGATCGCAAAGAAAAAGAAAGAGACCGAGAGAAGGAAAGAGAAAAGGAGAA
AGGAAAGGACCGGTCAAGGAGAGATGAAATGGATGTTGATGATGATGTGGAAATTCATGG
CTCAAAAGACAAGAAACGAGAGAAGGATAAAGAAAAGAAGCATAAAAGGCGCCACCATGA
CACCACAGATTCTGAAAAGGATGAGAAGGATGACTCGAGGAAATCTCGAAGGCATAGCAG
TGATCGCAAGAAATCTAGGAAGCACACCCATGCTTCAGACTCAGATAGTGAAAACCGCCA
TAGAAGACACAAAAGGGATCGAGATAGTTCCCGCAAAAACGGTGCGCATGAGGAGCTTGA
AGACGGTGAACTTGGAGAAGATGGGGAGATCCATTAGGCTTATGCTTTTACCTCCCAAGA
TTTGTCAGTACTTACCACCGTCCCTTTGTCATGTTCTCAATTGCTGCTATTATGTCTTAT
TCTGCTTATTAATAACTGACTAGTGGTATAATTACCGAAAATTAATGCTACTTTTTTTTG
TCATTTTCTGGCATCAACTCCTTTCTGTAGTAGCATAAAATTGGTTGGCCTATACTCTTG
ACCTTGCTCTGGGGAGCTTTGTCGTCTAACTTGTGGTTTAGTGGTGGCCTATAGCTCTGA
CGGTTTACTGTATGTTTGCAATTTACTGGTTTTATGCTTGCAGTTTGTTACTGACAATTT
TGGGTGAGAAATCAGAGTTTGGGTAGTGGTGTCCTGATTGTAGGCAATATGGTTTCTGAC
CAAGCCAGTGATGGACAGTTCCATGCACCCTGTTGCCATTGATTCAGCATGGACATGGAT
GCCCGTAGCAGCAGTAACAACACCTGTTTGCAAGAGGGACAGCCGCCTGCAGCAGTTCAT
CATCTCAGTCAGTGCCCATATGAGATATATGGTTTTTTCACAGCAATGAGTTAATTTGAC
AGTGCCGTAATGATGTGTACATGTGTATACATGAATGCATACTCTAGTCGTCTGATCTCT
TCCCAGGATTTTTACCTGGGTAGGGATGCAAGCGGGGCGCTACAACTGCCTGCTTCGGGT
GTTCTGCTGGACAAATCAGTTGTAGTTTCTTTTTCGTGTCATTAGTACTATAGTTTATAC
TGTGATAACTGCTCAACTGGCTGTTGCTGGGGCACCTCTTGCATCCTAGTTTGAAGGGTA
GATCCTGTGTGATGCTTGTAAGCTAGCTGGAAGATGGTTTCCTGTTGGTGAATCATCTTG
TGCAGTTTATATATTTTGACCCGGTAAGGT

Homology of Contig U35_15112 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g34780.2	447	2e-109	protein\|protein binding protein, putative, expressed
Brachypodium v1_2	Bradi1g37130.1	1001	0.0
Arabidopsis v10	AT1G44910.1	958	0.0	\| Symbols: ATPRP40A, PRP40A \| pre-mRNA-processing protein 40A \| chr1:16975930-16982818 FORWARD LENGTH=958