barSeed - Barley Seed Development Database

Probe CUST_25683_PI390587928

Source Contig U35_46677

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25683_PI390587928	Hv_44K_v2	ACCAAGGTTGCCAAGCGCTACGTCGACCACGCCTTCGTGCTCCGCCTCCTCGACCACTTC	515	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40751.1	2253	2e-24	376 - 435	100	60 / 60	plus	None
MLOC	AK372999	2004	3e-21	875 - 934	97	58 / 60	plus	ABC17753
JLOC1	JLOC1_26619.1	1079	8e-25	376 - 435	100	60 / 60	plus
Harvest21	ABC47096	605	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_46677	605	3e-25	516 - 575	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_46677 605 Hv_44K_v2
CGCCGGCGCCGCCCTCGCCCACCTCGCCGCACCTGGCCCCCTCCGCCTTCGCCGCCGCCC
CCTCCCCGGCCGCGGCCCAGCCGCCGCTCCTCGAGCCGCTCCCGCTCCTCCGCGACGTGG
CGGCCGCCGACCGCCCGGGCCTCCTGCTGGCGGAGCTGCGCCTCGTCGCCGCGCTCTTCG
ACTTCTCCGACTCCCTCAAGCACCCCCGCGAGAAGGAGGCCAAGCGGCAGGCGCTGCTCG
AGCTCGTCGACTACGTGCAGGCCCCCGCCGCCGCCGCCGGCAGCAACAACAACGCCCCCG
CCCGCCTCCCCGACGCCGTGCAGGAGGCCCTGGTGGCCGCCATCTCCGCCAACATATTCC
GCCCGCTGCCCCCCGCGCTGCACGAGTCCGCCGCCTCCATCGACCCCAACGCCACCCCGG
ACGACGAGGAGGAGCCCTACCTCGACCCCGCCTGGCCGCACCTCGCGCTCGTCTACGAGC
TCCTGCTCCGCTACGTCGTCTCCCCCGACACCGACACCAAGGTTGCCAAGCGCTACGTCG
ACCACGCCTTCGTGCTCCGCCTCCTCGACCACTTCGACACCGAGGACCCCCGCGAGCGCG
AGTAC

Homology of Contig U35_46677 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47790.1	536	1e-78	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g12470.1	518	2e-80
Arabidopsis v10	None