barSeed - Barley Seed Development Database

Probe CUST_25668_PI390587928

Source Contig U35_46692

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25668_PI390587928	Hv_44K_v2	AAAGATCTTCTTCTTCTTCCGATGCTCTCTTGCTGCTCCATTTTGTTTGCCCCGTTGTAA	77	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361986	1197	6e-24	1115 - 1173	100	59 / 59	plus	ABC09250 ABC09252 ABC14337 ABC53019
MLOC	MLOC_23224.1	948	6e-24	38 - 96	100	59 / 59	minus	ABC09252
JLOC1	JLOC1_16061.1	1048	3e-24	836 - 894	100	59 / 59	plus
Harvest21	ABC09252	1292	1e-24	1183 - 1241	100	59 / 59	plus	ABC09252
Harvest35	U35_46692	530	3e-25	78 - 137	100	60 / 60	minus
Harvest35	U35_2500	1640	1e-24	1181 - 1239	100	59 / 59	plus

Contig Sequence (530 bp)

>U35_46692 530 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTTGAAACCAAACAGGGCCTTATTTGCTCATGATTAGTCAAA
CGGTAATTTTTCTTTTTTTACAACGGGGCAAACAAAATGGAGCAGCAAGAGAGCATCGGA
AGAAGAAGAAGATCTTTCTCCTTCCTGCATCTCTCTCTCTTTCGCTCGCTGTATTTTCAC
CTACAGGCTAAACCAATATCTCCACGTCACAGACAGGGGAGAGAAGAGCAGAGAAGAGAG
GGGGTGCTCTGCTCTGCTCTGCTCATTTCATCTCGATGCTTCTGAAGTCGAGCATGGCGG
TCCGGAGCCCCATGAAGCTGCTGCACTTGCAGTCCGAGCTCCTGGGGAGCCCCATGCTGC
AGCTGAAGCAGAGGCCCACCACGCCGACGCCGACGCCGACGCCGGCCTCCCTCTTCACCA
CGGGCTTGGTGTCCACCATGGGGTCCTCGTGGATCGGGGGGCTGATGCACAGGTCCAGGT
TCAGGTCCGGGCACTTGAGCGGCTTCCCCTGGCCCCAGTCAAGCTGGGGG

Homology of Contig U35_46692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None