barSeed - Barley Seed Development Database

Probe CUST_25667_PI390587928

Source Contig U35_46693

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25667_PI390587928	Hv_44K_v2	TTCCACCAGGCCAAGGTCGTCAAGGTCGTCCACAACGAGGCATCCTCCCTCATCGTCTGC	310	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358959	1865	2e-24	791 - 850	100	60 / 60	plus	ABC00615
MLOC	AK373933	1999	2e-24	651 - 710	100	60 / 60	plus	ABC00615 ABC06843
MLOC	MLOC_59102.2	4013	2e-24	3639 - 3698	100	60 / 60	minus	ABC00615 ABC06842 ABC06843
MLOC	MLOC_59102.1	3887	2e-24	3550 - 3609	100	60 / 60	minus	ABC00615 ABC06842 ABC06843
JLOC1	JLOC1_38438.1	3903	8e-25	3550 - 3609	100	60 / 60	minus
Harvest21	ABC47135	400	3e-25	311 - 370	100	60 / 60	plus
Harvest35	U35_46693	400	3e-25	311 - 370	100	60 / 60	plus

Contig Sequence (400 bp)

>U35_46693 400 Hv_44K_v2
GCCCGTCGACCTCGCCGTGGTGGGCGGCGGGCCCGCGGGGCTCGCCGTGGCGCAGCGCGT
CGCCGAGGCGGGCCTCTCCGTCGTCTCCATCGACCCCTCCCCGGGCCTCGTCTGGCCCAA
CAACTACGGCGTCTGGGTCGACGAGTTCGAGGCCATGGGCCTCTCCGACTGCCTGGAGGC
CGTCTGGCCCTCCGCCTCCGTCTTCATCGACGACCACACCTCCAAGTCGCTCCACCGCCC
CTACGCCCGCGTCGCGCGCCGCAAGCTCAAGTCCACCATGATGGACCGCTGCGTCGCCCA
CGGCGTCCGCTTCCACCAGGCCAAGGTCGTCAAGGTCGTCCACAACGAGGCATCCTCCCT
CATCGTCTGCGACGACGGCGTCGCCGTCCCGGCCACCGTC

Homology of Contig U35_46693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09750.1	490	5e-63	protein\|lycopene beta cyclase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g06597.1	492	9e-68
Arabidopsis v10	None