barSeed - Barley Seed Development Database

Probe CUST_25658_PI390587928

Source Contig U35_5603

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25658_PI390587928	Hv_44K_v2	GACTTCCTGTGGAATCACTCGCTGTAAAAACCACGATGATGATAATTTTTTATTACTTCA	500	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376360	584	2e-24	521 - 580	100	60 / 60	plus	ABC03511 ABC03512 ABC03514 ABC03515 ABC05348 ABC11923 ABC14284 ABC17317
Harvest21	ABC11923	586	3e-25	501 - 560	100	60 / 60	plus	ABC11923
Harvest35	U35_5603	586	3e-25	501 - 560	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_5603 586 Hv_44K_v2
GCTTCAGTCAGACACTTCAAGAAAATCAACACCAGCTCTGTTCTTTCAGTATCGCAACTT
CGCAAGCCACTAGTACTGAGTCTCCAACAATCAAGTCATCAGAAACGCAAGACCAAAACC
AAGAAGAAGCAGAAGAGATGGCTGGTCCGGCAAAGGCGTCGTGGATGGTGGCGATGAGCG
TGGGCGCCGTGGAGGCCCTCAAGGACCAGGCCGGCCTCTGCCGCTGGAACTATGCGCTGA
AGTCCATCCACCGGCCAGCCAAGGCCAGGGCCAACGTCTGTGGCGGCGTCTCGCAGGGTG
CCAAGCAGCTTCCGGCCTCTGCTGCGGTGTTGGCGGAGAGGCGGCGAGCCGAGAAGGCCG
AGGAGGGGATCAGGACCGTCATGTACCTCAGCTGCTGGGGTCCAAATTAGTAGAAGCTGC
TACTTGGTAGTAGTAGTACTAGGTAGGCGTGTCTGTGTTTGGCCTGAAACCACCATGTAA
CTAGAAACTTGGTACTAGCTGACTTCCTGTGGAATCACTCGCTGTAAAAACCACGATGAT
GATAATTTTTTATTACTTCAGTTCATATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5603 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None