barSeed - Barley Seed Development Database

Probe CUST_25629_PI390587928

Source Contig U35_43540

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25629_PI390587928	Hv_44K_v2	AATATAAATCCGATCTGCTATGTATGATGTGTTGTTTTCTTAAGGTCGCCGAGGCACTGG	403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53079.1	511	2e-24	388 - 447	100	60 / 60	minus	ABC07522 ABC40333
Harvest21	ABC40333	652	3e-25	404 - 463	100	60 / 60	minus	ABC40333
Harvest35	U35_43540	652	3e-25	404 - 463	100	60 / 60	minus

Contig Sequence (652 bp)

>U35_43540 652 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAAAAAAAGAAAAAGACAGTAGAATCTGTATTCCCGACATTT
ACTTTTGAACCTCGCGCCAGCTGTAGCTCCAAAAACGAACAAACTAAAAACAAAGAAAAT
CAGCACAATGCCTCAAACATCGCTCACACTTTTGTTTCGATTTTGAAAGAGTCGACGATT
GTATGTAGCCTGTCCTTCATCTTGTCCCATCTCCTCTCGTTTGCACCCGTTGCCAACGTG
TAAAATTTGCCATTTGCTATGGTAATTGTACCAAGCGCGTGTCTAGTGAAATTTGGAGCC
TGAGCCGTGAACTCGAAAGTGTAATAAGCTCTTCCATCGATATCGGTCTCTTTCGCCTCA
ATCAACTTGGTCTTCTGCGTGGGCGGAGATAGGACTTTCCGCACCAGTGCCTCGGCGACC
TTAAGAAAACAACACATCATACATAGCAGATCGGATTTATATTCTGAGCAAACCGCACCG
TGTAGACCGGGTTCGATATATCTGAAAAGGCATATGATCGAGTGGAGTGGCACGGAGGAA
GGACCTGGTCGGGCGGGCCGAGGTCGCGGATGTCTTCCTTGGTGGTGGGGATCATGTTGA
TGCTGACGCTCTCAAGCGGCTCGATCACGTCCTTGTACACCTTGTCCTGCCC

Homology of Contig U35_43540 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g25900.1	275	9e-56	protein\|PsbP, putative, expressed
Brachypodium v1_2	Bradi1g77047.1	238	1e-61
Arabidopsis v10	None