barSeed - Barley Seed Development Database

Probe CUST_255_PI415269222

Source Contig TA46731_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_255_PI415269222	Hv_44K_v2	TAAAATACTAAATGGCAGTGAGGTAAGCCGCACGTGAACGGAGGGAAGCAGAAATACGAT	1165	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.131	1.238	1.522	1.196	0.434	0.530
Raw	135.584	205.509	248.157	291.466	41.218	52.256

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363985	1712	3e-22	1113 - 1171	98	59 / 60	plus	ABC34524 ABC37229
MLOC	AK366202	1905	3e-22	1184 - 1242	98	59 / 60	plus	ABC34524 ABC37229
MLOC	MLOC_61514.2	1487	3e-22	1000 - 1058	98	59 / 60	plus	ABC37229
MLOC	MLOC_61514.1	1966	3e-22	1006 - 1064	98	59 / 60	plus	ABC04419 ABC34524 ABC37229
MLOC	MLOC_61514.4	1083	3e-22	945 - 1003	98	59 / 60	plus	None
MLOC	MLOC_61514.3	1484	3e-22	1000 - 1058	98	59 / 60	plus	ABC37229
MLOC	MLOC_61514.5	2112	3e-22	939 - 997	98	59 / 60	plus	ABC04419 ABC34524 ABC37229
MLOC	MLOC_61514.6	2115	3e-22	939 - 997	98	59 / 60	plus	ABC04419 ABC34524 ABC37229
JLOC1	JLOC1_40205.4	3697	1e-22	797 - 855	98	59 / 60	plus
JLOC1	JLOC1_40205.3	3799	1e-22	1006 - 1064	98	59 / 60	plus
JLOC1	JLOC1_40205.2	3901	1e-22	998 - 1056	98	59 / 60	plus
JLOC1	JLOC1_40205.1	3906	1e-22	1006 - 1064	98	59 / 60	plus
Harvest21	ABC15591	1295	5e-23	1173 - 1231	98	59 / 60	plus
Harvest35	U35_7333	1295	5e-23	1173 - 1231	98	59 / 60	plus

Contig Sequence (1265 bp)

>TA46731_4513 1265 Hv_44K_v2
CGGCCCATCGCTGTCTCCCCCCTCCGCATCACACCCGCATGGCCGCCGCCGGGTTCCGGC
TGGGCCAGCGCGTGCACGCGTCCGGCGACCCCCGCCGGACCGGGACGGTGCGCTACCTGG
GCCCCGTCGACGGCCACGCGGGCGACTGGGTGGGCGTCGACTGGGACGGCGGTGCCGGAG
GTCGCCACGACGGCTCCCTCGCCGGCCGCCGCTACTTCTCCGCCGCGGCCGACCGCTCCG
CCTCCTTCGCGCGCCCCTCCGCGCTCAGCGCCGGGATCCCGCTCCCCGACGCCCTCCGCC
TCCGCTACCGCGTCGACGACTTCACCAAGGAGGAACAAGATGAAATGTACGTCTTCTCGA
CGAGCCAGAAGCGCGTGTCGGTGGAGCTGGTCGGGACGAACAAGGTCCGGGACAAGCTCA
AGAACTTTGACGAGCTGCTGTGTGCGTCCGTTTCCTTCATGGGCGTGAGCTCGGCTGGAT
CGCCGGAGGAACTGCAGGGCTTGGTTCCGAATCTCAGGCAACTTGATTTAACTGGAAATC
TCATTTCGCAGTGGCAAGATATATTCTCTCTGTGTCAAGCTCTGCCATCTCTGGAAGTTC
TCGATTTGACAAACAACATCATGGAGAATGACTTTGTAGAAAGTCCATTGCTGAAGAATA
TTCGTATTTTGGTCCTCAACAACTGTGGTGTAACCTGGGAACTGGTTGAAAAGCTTAAAG
TTCCATTTGCATGTCTCAGCGACCTCCACCTAATATGGAACAAGATGAACATAATCACGA
CCCCAGTTGGAAATTTTGTGCAAGGTTTTGACACACTGCGGCTCTTAAATTTGGAAGACA
ATCACATTGTTTCATGGGATGAAATTGTAAAACTTTCTTATTTAAAAAGCTTGGAACAGC
TCCATTTGAACAAGAACAAGATAAAGCATGTAAGATACCCGTCTAATCTTCCATCGTCAG
GCCCTCTTGGTGATGTATCTGTTCCGGCCTTCGAAAAATTGCATGTCCTTTTATTAGGAT
CTAATGAAATAGAAGACTTTCCTTCTGTGGATTCACTCAACCTCTTCCCAAGTTTAATGG
ATGTCAGGATTTCTGATAATCCTATAGCTGATCCTGCCAAGGGTGGTGCTCCTCGATTTG
TGCTTGTTGCTCGACTAGGAAATGTTAAAATACTAAATGGCAGTGAGGTAAGCCGCACGT
GAACGGAGGGAAGCAGAAATACGATACATTCGCCTTGTTATGGNAAAAGCAGAATCAAAT
GACCC

Homology of Contig TA46731_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01500.1	547	0.0	protein\|tubulin-specific chaperone E, putative, expressed
Brachypodium v1_2	Bradi2g39750.1	534	0.0
Arabidopsis v10	AT1G71440.1	531	8e-105	\| Symbols: PFI, TFC E \| tubulin folding cofactor E / Pfifferling (PFI) \| chr1:26921271-26924373 REVERSE LENGTH=531