barSeed - Barley Seed Development Database

Probe CUST_25595_PI390587928

Source Contig U35_17287

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25595_PI390587928	Hv_44K_v2	TTTGGCACTCTATACATTGCTTCCTGTGCAACCGGCTGTAGTAGTACTTAGAGTAGTGTT	1323	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16789.1	2005	2e-24	1884 - 1943	100	60 / 60	plus	ABC08693
MLOC	MLOC_16790.2	1178	2e-24	1026 - 1085	100	60 / 60	plus	ABC08693
JLOC1	JLOC1_11587.2	899	8e-25	748 - 807	100	60 / 60	plus
JLOC1	JLOC1_11587.1	1181	8e-25	1030 - 1089	100	60 / 60	plus
Harvest35	U35_17287	1383	3e-25	1324 - 1383	100	60 / 60	plus

Contig Sequence (1383 bp)

>U35_17287 1383 Hv_44K_v2
GAAGAAGCTAAGAAGGCATATATGGCTGCTAGAGAGGAGTCAGACGACACCACCGAGGTT
GCTTCAGAGGAAAAAGTCTCGTGAGCACTGATTGACAAGGTTGATGCCATGCTTCAGAAA
TTAGAAAAGGAGATTGATGATGTGGATGCACAAATCGGAAACTGCTGGCAACTGCTTGAT
AGGCTACCAACGAATTGGAAAGGCCAAGATGAAGGAGCAATCATCAAGCCACCCGCTCAT
CAGGTGGTGGAATGCCTGCCTGGTGGCTTCTCATTCGCAGGAGTCGTCATATGTTCAAGT
TGTTAATGAGTTGATCCTGCAAGCCAATGAAGATTCAGACGACGAGGTTGCTCTGGAGGC
TTGTGACTCTGGTTTGCGTTTTGTTAACATGGTCAGTGTACTGCGATGCCCCCTGAAGGA
TTGCATGAGTTCTTGCCATACTTAATACAAACTTTAGTGTTGAACGTGGTCTGCACTGCC
GATGATGGAAATGGAATCACTTGCTGATGCTGAGCAAAATATGCCTCAGGCAGGTGATGT
CCGGAAGGAGCAGGAAGCTGCTGTATTGGTGCTAAAGCAGAGGGATGCATTGCTGCATTT
TATCCCCACCTTGCAGGCTTTAGGTCCACTCAACCAGCAGTAGAAGGTTTGGAGGGAGGG
TAACCTGAATGCACCGGACAATGCTAACAAGAAATCCGACCAGCTCACAATCTTCCAGTT
CCTAGAGAAGTCACCTTTGGTAGATGAAATGGAACTTGTTACTTTTGGTATTCCTGATGG
ATTTCCGCCGCAACCTGCTGACATTACGCGGAAGCTAGTTGGTCTCGTTGATTCCTATAA
TACGATGATGCCTTTACGGCAAAAGTACTTATACAAGAAGATACGTGGGGAACGTGGCAA
GGAGATGGCAGACCTCGAGAAGACCTTGACAAGGTGTGTTAACCGCATCGACGAGAAGAT
TGAGGGGATCAGGGAGGCAGGAGGATTTTGTCCTAATCGTCCGAAGCTATTTGACAGTGT
CCCGAAGCCCTTGAAGCAGCAGAAAGAAAAGGTCAAATCTGGAGTGAAGTGATCTTTGAG
GAATATTTCCACTGACATGCAAAAATGTGGGGAGGGAAATGAAAGCAGTAAAAGTACAGG
CGCTTGTGCATAGTGATGGATATAAGCAGTAAAAGTACAGGCGCTTGTGCATAGTGATAT
GGAAGAGGATATAAGCAGTAAAAGTACAGGCGCTTGTGCCTCGTTCCTCGTTTCTGTTTC
CCAGTTATTACAAACTTAATAGCATATACTGTACAATTCCTGTGACTAAAATAGATAGTT
TGTTTTGGCACTCTATACATTGCTTCCTGTGCAACCGGCTGTAGTAGTACTTAGAGTAGT
GTT

Homology of Contig U35_17287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None