barSeed - Barley Seed Development Database

Probe CUST_25574_PI390587928

Source Contig U35_17290

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25574_PI390587928	Hv_44K_v2	TACATCATTGGTTTGAGGTATACTTGTATAGGCAATCAATCCGAGTCTTTGGCTAAAAAA	804	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63920.1	3577	3e-22	89 - 144	100	56 / 56	minus	ABC07411 ABC07412
JLOC1	JLOC1_41921.4	3261	1e-22	3095 - 3150	100	56 / 56	plus
JLOC1	JLOC1_41921.3	3192	1e-22	3026 - 3081	100	56 / 56	plus
JLOC1	JLOC1_41921.2	2272	1e-22	2106 - 2161	100	56 / 56	plus
JLOC1	JLOC1_41921.1	2456	1e-22	2290 - 2345	100	56 / 56	plus
Harvest21	ABC07411	875	3e-25	805 - 864	100	60 / 60	plus	ABC07411
Harvest35	U35_17290	875	3e-25	805 - 864	100	60 / 60	plus

Contig Sequence (875 bp)

>U35_17290 875 Hv_44K_v2
GGGCAAATGTCTGCTCAGTGCAATTTCAACCTGATTCCGCTCGCTCCATTGCAATCGGAT
CTGCAGATCACAAAATTTACTGCTATGATCTTCGCAACGTACGAGCTCCTTATTGTACAC
TAGTTGGCCACACAAAGACTGTAAGCTATGTCAAGTATGTAGATGCATCAACCATCGTAT
CTGGTTCCACTGACAACTCGTTGAAGCTTTGGGACTTGTCCATGAATCAAGCAAGAGTAA
TTGACAATCCAATTCAGACTTTTACAGGCCATACAAATACAAAGAATTTTGTTGGCCTTT
CCATTTCTGATGGGTACATTGCTACTGGGTCAGAAACAAATGAGGTTTTCGTCTACCACA
AAGCATTTCCAATGCCAGTCTTGGCGTATAAGTTCAACGTCACAGACCCAATTTCAGGCC
AGGAGATCGATGATCAATCGCAGTTCATTTCGTGCGTGTGTTGGAGGGGGCAGTCTTCGA
CACTTCTTTCTGCTAACTCCAGTGGGAACATTAAGGTGTTAGAAATGGACTGACCCTGTG
CCGAAGGGCGAGGGTGCTGCCTGGTTTCGAGTAGAAATGGACCGACTTCAGTGACTTGTT
ATCAGGGGAATGTGCATGTCTTGCTATTTTATAATCCCTTCAAGGCAGAGGTGGGAATAG
GGGTACCCCAGAGTTGGGAACTACTGGTAGGGTGGTAGTGTTAGCTATATCGAGAGTTAG
CATAGGATTACAGGTTAGCGTCATAGCAAACGTAGCATAAATAGTGAAGATATTTGAGAT
GTTGGGGGTGGCCCAAGGGTTTTGTACATCATTGGTTTGAGGTATACTTGTATAGGCAAT
CAATCCGAGTCTTTGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17290 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49590.2	1145	1e-65	protein\|suppressor of phythchrome A, putative, expressed
Brachypodium v1_2	Bradi2g48657.2	782	8e-115
Arabidopsis v10	AT3G15354.1	837	6e-86	\| Symbols: SPA3 \| SPA1-related 3 \| chr3:5169327-5172480 REVERSE LENGTH=837