barSeed - Barley Seed Development Database

Probe CUST_25503_PI390587928

Source Contig U35_19838

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25503_PI390587928	Hv_44K_v2	TCGAGTTTTGCCACAACACTTTTTCAGACTAGATCTTGTTAATAAACACCTTCTGATTGC	1446	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364785	1542	2e-24	1478 - 1537	100	60 / 60	plus	ABC16853
MLOC	MLOC_62405.1	688	2e-24	628 - 687	100	60 / 60	plus	ABC16853
JLOC1	JLOC1_40840.1	723	8e-25	626 - 685	100	60 / 60	plus
Harvest35	U35_19838	1526	3e-25	1447 - 1506	100	60 / 60	plus

Contig Sequence (1526 bp)

>U35_19838 1526 Hv_44K_v2
TACTCTGCTTTCGTCGTTCCCCTCCACCGCGAGCTTCCAGAAGCGAGGGAAAGGGGAGGA
GGAGGAAGCAAGGCTGTGGACCGATCCCCGCCCTCGACGGCATGCCGCGCGTCCTCCCTC
TCGACATTGAGCCCGGGGAGGCGGCCAGAGCTGGTGAGACGGTCGTAAGCATGCCAAGCT
CTTCAGCTGTGGCATCACGCAAGGGAATTGAGCCTTCCGAGCAAAACATAAAGGACGACG
AATGTGCGAGGCTGGTGATACCAGCTCAACATGCAACAGCTGACAACAACACAGAGATTT
TGCCTGAGCAACCAAAGTCAAGACACTTCATTTGGTGGATGAAAGTTCTGCTTGGCTGCT
TCCTTCTTATATTAGCATCTTATATCTTCGTGAAATTTGGAGTCCCCTTTGCCTTTGAGA
AGGTTCTGTTGCCAATCATGCAATGGGAAGCAAGTGCCTTTGGCCGTCCAGTATTGGCTC
TTGTCCTCGTCGCATCTTTGGCTCTCCTCCCACTCATCTTAGTCCCTTCTGGACCTTCTA
TGTGGTTAGCAGGAATGATCTTCGGTTATGGCTGGGGTTTCTTGATTATTATGGTTGGGA
CTACTCTTGGCATGGTTGCATCATATTGGATCGGCTCATTGTTCCGCGAACGTCTACATG
CATGGTTAAAAAGATGGCCTCAGCAGATAGCTCTAATACAGCTTGCTGGTGAAGGGAACT
GGTTTCAGCAGTTTCGAGTTGTTGCACTATTCAGAGTCTCACCATTTCCGTATACAATTT
TTAACTATGCCGTAACCGTGACAGAAATCAAGTTCAATCCTTACCTATGTGGTTCAGTTG
CCGGAATGGTACCTGAGGCATTCATCTATATCTATAGCGGACGGTTAATACGTACTTTGG
CTGATGTGAAGTATGGCAAGTATAGGATGACGCCAGTGGAGCTAACATACAACATAATCT
CGTTCATCGTTGCTGTTGTCCTCACCGTTGCCTTTACAGTTTACGCCAAGAGGGCACTAA
ACCACATAAAAAGCTCAGATGATATTTGCGCAGAGGACCAACCTGGGGTGACTGCACTCA
AGAATGGCCGCCAGGAGTGTTCCCATGCACATCCTCTAGCCCTAGATGTCGTGTGATGAT
ATCTGGATCTATTGGGAGCTGAGCTGCTTAGAGAAAAAGTGAGGTGTGGTGTGGTGTTAC
TTGGTCATCGTTTTCTCGGTTGGAAGGGGTGAGGTAGGCTCTGATATCAGGTGGATGCAC
CTGTCTAACTAGATACATGCCCTGCTAATATGGTTATAGTACATACTTGATTAGTAGTTT
CATGTACTTAATCACCAGAACATGTGACCAGCTTTAACTTTTGTTGTTCTAGTTGTTGAT
CGACTGGCAATTTAGCCTTGTCTTGAGGTGCATGTATTTGTTTGGTTGTTTCGGATGTCG
GGTGCATCGAGTTTTGCCACAACACTTTTTCAGACTAGATCTTGTTAATAAACACCTTCT
GATTGCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_19838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g25750.1	347	2e-165	protein\|SNARE associated Golgi protein, putative, expressed
Brachypodium v1_2	Bradi1g61350.1	349	0.0
Arabidopsis v10	AT2G02370.1	320	2e-111	SNARE associated Golgi protein family \| chr2:621841-623084 FORWARD LENGTH=320