barSeed - Barley Seed Development Database

Probe CUST_25422_PI390587928

Source Contig U35_38330

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25422_PI390587928	Hv_44K_v2	TTGAATAGCGCAATTGTTTATACAAAGCCTCTCATATATGAGTGTGGCCCATCGTGCAGG	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32627.1	2785	2e-24	1837 - 1896	100	60 / 60	plus	ABC19513
JLOC1	JLOC1_21247.1	2648	8e-25	1828 - 1887	100	60 / 60	plus
Harvest21	ABC34254	613	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_38330	613	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_38330 613 Hv_44K_v2
GGCGCTCCTCAAATATTAAAAACATGAAGAAAGGCATGCTTGCTCAGAAGTTAAAGCGCG
ATGGCATCGGCAATGACTCCAGGAATAGGTTCACGAAGGTGTCTAAGTGTGTGGATCATC
TTCCGACCAATCAAATTAAAGAGAATGATAATGTGGGCCTTGTTACCAACAGGATGACTG
TATTAGCATTGATGGCTCCTGAAAAGTGCCCATGGACAGAAGGGAAGAGGCCTATTGCTG
GTGTTTCCCAGTCTCTCACTTGTAGGAATAATAAATCTCTTACCATTCGTGAAGGCCTTT
GTTTGCCTGACATATCTCAAGGAAAAGAGAGCATTCCCATATGTGTGATCAACACAATTG
ATGGCATGCTGCCAACGCCATTTAAGTACATCACCAAAGTCATATATCCACCCTCATATG
CAAAAGCACCTTCAATAGGCTGTGACTGCACTAACGGTTGCTCGGACTCTAATGAATGTG
CTTGTGCTGTGAAAAATGGAGGGGAGATCCCATTCAATTTGAATAGCGCAATTGTTTATA
CAAAGCCTCTCATATATGAGTGTGGCCCATCGTGCAGGTGCCCGCCATCATGCCACAATA
GGGTGAGCCAGCA

Homology of Contig U35_38330 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19830.1	1202	1e-54	protein\|histone-lysine N-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi4g28460.1	969	8e-97
Arabidopsis v10	None