barSeed - Barley Seed Development Database

Probe CUST_25408_PI390587928

Source Contig U35_14385

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25408_PI390587928	Hv_44K_v2	GGTGGTCGTGGCCGTTCGTATTTTCGTTCTGCCTTAATGTTGCTTCTTATCGTGAGTAAA	1101	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56778.2	3559	2e-23	3027 - 3084	100	58 / 58	plus	ABC01543 ABC29795
MLOC	MLOC_56778.1	1896	2e-23	1281 - 1338	100	58 / 58	plus	ABC01542 ABC01543 ABC29795 ABC53024
JLOC1	JLOC1_36753.2	1851	1e-23	1149 - 1206	100	58 / 58	plus
JLOC1	JLOC1_36753.1	2113	1e-23	1411 - 1468	100	58 / 58	plus
Harvest21	ABC35732	524	4e-24	243 - 300	100	58 / 58	plus
Harvest21	ABC01543	1166	2e-22	1096 - 1150	100	55 / 55	plus	ABC01543
Harvest35	U35_14385	1210	3e-25	1102 - 1161	100	60 / 60	plus
Harvest35	U35_14378	888	5e-23	592 - 647	100	56 / 56	minus

Contig Sequence (1210 bp)

>U35_14385 1210 Hv_44K_v2
CCCCAGTTCGAAAGCCCGAGGAGACCAGCGGCGACGCAGGCGCAAAACGCAGATTTGGCA
TTCAGAAAAAATTAAAGCAGTAAACTGTGAAGATGTCGGCACCAGGGGAGCTTTCCCGTG
AGGAGAATGTGTACATGGCTAAGCTCGCCGAGCAGGCTGAGAGGTACGAGGAGATGGTTG
AGTTCATGGAGAAGGTGGCCAAGACCGTCGACTCCGAGGAACTCACTGTGGAGGAGCGCA
ACCTCCTCTCTGTTGCATACAAGAATGTGATTGGAGCCCGCCGTGCCTCATGGCGCATCA
TCTCCTCCATTGAACAGAAGGAGGAGAGCCGTGGCAACGAGGACCGGGTCACACTCATCA
AGGAATACCGTGGCAAGATCGAAACTGAGCTTAGCAAGATATGTGATGGCATTCTCAAGC
TGCTTGAAACCCACCTTGTTCCGTCTTCCACTGCCCCTGAGTCCAAGGTCTTCTATCTTA
AGATGAAGGGTGACTACTACAGGTATCTTGCGGAATTCAAGAGTGGGCCTGAGAGGAAGG
ATGCTGCTGAGAATACCATGGTGGCATACAAGGCTGCTCAGGATATTGCTTTGGCTGAGC
TGGCTCCAACACATCCGATTAGGCTTGGGCTGGCACTAAACTTCTCAGTGTTCTATTATG
AGATCCTCAACTCGCCTGATCGTGCTTGCAATCTTGCAAAGCAGGCATTCGATGAGGCCA
TTTCGGAGCTGGACACACTAAGCGAAGAATCCTACAAGGACAGCACCTTGATCATGCAAC
TCCTTCGTGATAACTTGACCCTCTGGACTTCCGACATCACGGAGGACACCGCGGAGGAGG
AGATCAGGGAGGCTCCGAAGCATGACTCGAGCGAGGGGCAGTAAAGCCGGCTTTGCGACG
CCCCGCAAGCTACTAGCTAGTGCTCGCTACTGTCAATGACGTTGCATGCAATGTGGTCTG
GATCGTGTCGTAGCCGTGTGTTATGGTTGTTGTTGCAAGATTTGGGGCTCCCCGTATGTG
ATGTTGCCGGGGAAGGTTGTGGTCGCTGCCTGTAGGCGGCTGCCTCCTGGTCTGGCTTGG
GGGGGAGCCACATGCACTGCTGGTGGTCGTGGCCGTTCGTATTTTCGTTCTGCCTTAATG
TTGCTTCTTATCGTGAGTAAAAAAAAAAAAAAAAAGTGGTCCTGTTTCGGTTCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_14385 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38870.3	263	3e-172	protein\|14-3-3 protein, putative, expressed
Brachypodium v1_2	Bradi5g12510.2	263	7e-175
Arabidopsis v10	AT3G02520.1	265	4e-152	\| Symbols: GRF7, GF14 NU \| general regulatory factor 7 \| chr3:526800-527915 REVERSE LENGTH=265