barSeed - Barley Seed Development Database

Probe CUST_2537_PI390587928

Source Contig U35_38236

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2537_PI390587928	Hv_44K_v2	TACTTTACTTCAGAGGATTGCGCATCTACCAAGCGGTCCTTGACGAACTCATGGAAAAAG	233	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357948	1562	2e-24	624 - 683	100	60 / 60	plus	ABC09967 ABC11693
MLOC	MLOC_28187.1	1323	2e-24	894 - 953	100	60 / 60	minus	ABC09967 ABC11693
JLOC1	JLOC1_18945.1	1384	8e-25	376 - 435	100	60 / 60	plus
Harvest21	ABC34114	316	3e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_38236	316	3e-25	234 - 293	100	60 / 60	plus

Contig Sequence (316 bp)

>U35_38236 316 Hv_44K_v2
CCATCTCGAGGGAGGACGTTGGTGCAGTACAGCCAAGGATTGTTCCAACCGCAGAATGTA
CGCGCTCGGTTCATCCAACTTCATGAAACCGATGCGCTTCGCCGGTGCTGGGATCCTCGG
CAGTGATCAGCTGCAAAATCCTGATTTCTACAACTGGCACAAAGTGTTTGTGCGGTATTG
CGATGGGGCGTCGTCTTCCGGGGACGCGGAAGGTCGAGCACAGGATGGAAGCATACTTTA
CTTCAGAGGATTGCGCATCTACCAAGCGGTCCTTGACGAACTCATGGAAAAAGGACTTGC
CAACGCTACACAGGCC

Homology of Contig U35_38236 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None