barSeed - Barley Seed Development Database

Probe CUST_25379_PI390587928

Source Contig U35_14393

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25379_PI390587928	Hv_44K_v2	CCCGAGAAACTATCTCTGGGTCATTATTTTCTTTGATTACTTGTCGGTTGCGTGTGTCTC	629	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58599.1	922	7e-23	813 - 872	98	59 / 60	plus	ABC01431 ABC33668 ABC41396 ABC45712
JLOC1	JLOC1_38091.1	1226	4e-23	781 - 840	98	59 / 60	plus
Harvest21	ABC01428	819	3e-25	630 - 689	100	60 / 60	plus
Harvest21	ABC45712	593	1e-23	175 - 234	98	59 / 60	minus	ABC45712
Harvest21	ABC41396	717	1e-23	559 - 618	98	59 / 60	plus	ABC41396
Harvest35	U35_14393	818	3e-25	630 - 689	100	60 / 60	plus
Harvest35	U35_46110	593	1e-23	175 - 234	98	59 / 60	minus

Contig Sequence (818 bp)

>U35_14393 818 Hv_44K_v2
AACGCCCTGTATCGGGTTCGGCTGCCAACAAAACAGAGGGGGCAAAACACACCCCGAGCG
GAAAAGGAGCGAGGGCCTCTCTCTCCATCCCCGACCTCTCGTGGCCGCTGCGAAGAAAAG
GAGCTTATCATGGCTTCAAAACGTATCCTGAAGGAACTCAAGGACTTGCAGAAAGATCCT
CCGACATCATGCAGTGCAGGTCCTTCTGGCGAGGATATGTTCCATTGGCAGGCAACCATC
ATGGGCCCTCCTGATAGTCCCTATGCTGGAGGTGTTTTCTTGGTGAATATCCATTTCCCC
CCGGACTACCCCTTCAAGCCTCCGAAGGTATCGTTCAAGACAAAGGTCTTCCATCCGAAC
ATCAATAGCAATGGGAGCATATGCCTCGACATTCTGAAGGAGCAATGGAGTCCTGCTTTG
ACGATCTCTAAGGTTCTGCTTTCAATCTGCTCGCTGCTTACCGACCCTAACCCGGACGAC
CCTCTCGTCCCTGAGATTGCCCACATGTACAAGACGGATCGGTCTAAGTACGAGACGACA
GCCCGCAGCTGGACGCAGAAGTATGCCATGGGATGATACGGAGCCCATGCTCGTATCCAC
TGCTTGCATGCAGAAGATTGTGTTGCTGTCCCGAGAAACTATCTCTGGGTCATTATTTTC
TTTGATTACTTGTCGGTTGCGTGTGTCTCCCTGATCCATGTAGGATCGCGTCGTAGTCAA
AACATCAACCTATCATTGCCAAAGTCCATAATGAAATTGACATATGCTTCTCGTGATAAA
AAAAAAAAAAAAAAATCTCCCATTCGCTGTATGGGCCC

Homology of Contig U35_14393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g60410.2	149	4e-107	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi2g53430.1	149	3e-108
Arabidopsis v10	AT3G08690.1	148	3e-103	\| Symbols: UBC11, ATUBC11 \| ubiquitin-conjugating enzyme 11 \| chr3:2641487-2642489 FORWARD LENGTH=148