barSeed - Barley Seed Development Database

Probe CUST_25376_PI390587928

Source Contig U35_14396

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25376_PI390587928	Hv_44K_v2	TGCTTGTTGGGTTAACCTTCATCAGTGTTGGTGTTATTTGGTAAATGTTCATTAAACATG	759	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252249.1	810	2e-24	724 - 783	100	60 / 60	plus	ABC01431 ABC01433 ABC01437 ABC45712
JLOC1	JLOC1_13385.1	952	8e-25	690 - 749	100	60 / 60	plus
Harvest21	ABC01431	844	3e-25	760 - 819	100	60 / 60	plus	ABC01431
Harvest35	U35_14396	846	3e-25	760 - 819	100	60 / 60	plus

Contig Sequence (846 bp)

>U35_14396 846 Hv_44K_v2
GCGCACGACACCACCACAAGGCGAGGGACCCGGAGAGAAAAACACCACCACCAAAGGCGC
CCTCCGTCCCTCTGTCCTCTCCTCGCTCGCCGTCCCCAACCTCTCGCTGCAAAAAGGTTG
ATTGTGATGGCATCCAAGCGCATCCTGAAGGAACTGAAGGACCTGCAGAAGGACCCTCCC
ACATCATGCAGTGCAGGCCCTGCTGGTGAGGACATGTTTCATTGGCAAGCAACGATTATG
GGACCCCCTGACAGTCCCTATGCCGGCGGTGTTTTCTTGGTGAACATTCATTTCCCTCCG
GATTACCCCTTCAAGCCGCCAAAGGTATCTTTTAAGACGAAGGTCTTCCATCCTAATATC
AACAGCAATGGAAGCATATGCCTTGATATTCTTAAGGAGCAGTGGAGCCCTGCTTTGACG
ATCTCCAAGGTCTTGCTCTCTATCTGTTCCCTGCTGACTGATCCCAACCCGGATGATCCC
CTGGTTCCCGAGATTGCCCACATGTACAAGACCGACCGGTCAAAGTACGAGACGACAGCC
CGCAGCTGGACGCAGAAGTACGCCATGGGTTGAAGACCTGCATCGTGGACAACTGAAATG
TCGCTTCAAGAAAAATATTTATGGGCCATTGTTTCTTCGATTTGTTGCTGGTTGTGTGTA
ATCCGATCCTCAAGGATTGTAAATTGCATTCGGCGTCGGCCCTATCATCAATTGCCACTA
GTATTGGCAGACATGCATGCCTATCACCCTATGCACCTATGCTTGTTGGGTTAACCTTCA
TCAGTGTTGGTGTTATTTGGTAAATGTTCATTAAACATGTTTGCTTCAAAAAAAAAAAAA
AAAAAA

Homology of Contig U35_14396 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g60410.2	149	2e-107	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi2g53430.1	149	2e-108
Arabidopsis v10	AT3G08690.1	148	2e-103	\| Symbols: UBC11, ATUBC11 \| ubiquitin-conjugating enzyme 11 \| chr3:2641487-2642489 FORWARD LENGTH=148