- Probe CUST_25314_PI390587928
- Source Contig U35_2569
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25314_PI390587928 | Hv_44K_v2 | ATATCAGAGTATGACCTGGGAGCAGAGGGCGACCTGTTCAAGGCTCCTGAGCCCATAGTC | 384 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.084 | 0.207 | 1.371 | 1.920 | 1.033 | 1.145 |
| Raw | 7.572 | 29.263 | 168.142 | 359.877 | 70.755 | 85.110 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK250075.1 | 1483 | 2e-24 | 404 - 463 | 100 | 60 / 60 | plus | ABC06164 ABC06165 |
| MLOC | AK355694 | 1405 | 2e-24 | 349 - 408 | 100 | 60 / 60 | plus | ABC06164 ABC06165 |
| MLOC | MLOC_73103.2 | 659 | 7e-23 | 165 - 224 | 98 | 59 / 60 | plus | ABC06164 |
| MLOC | MLOC_73103.1 | 986 | 7e-23 | 514 - 573 | 98 | 59 / 60 | plus | ABC06164 |
| JLOC1 | JLOC1_48649.1 | 943 | 4e-23 | 471 - 530 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC06163 | 629 | 3e-25 | 381 - 440 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27895 | 677 | 1e-23 | 378 - 437 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC06164 | 1367 | 1e-23 | 175 - 234 | 98 | 59 / 60 | plus | ABC06164 |
| Harvest21 | ABC06162 | 417 | 1e-23 | 328 - 387 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_2569 | 684 | 3e-25 | 385 - 444 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2567 | 1520 | 1e-23 | 328 - 387 | 98 | 59 / 60 | plus |
Contig Sequence (684 bp)
>U35_2569 684 Hv_44K_v2 TCCTTCATTCATTCATTCATTCACCATCCCCTCCCCTCCTCCCCTCCCCTCCCACAGAGA AAGAGAGAGAGAGAGACCAAGATGTTCGCCGACGCGGGGTTCAGCTTCTCCCCATCCTAC TCTTCTTCTTCCTCGCCGCCGTCAGCCTACTCGGGTTACTCCCCCACCGTCTTCTCCCAC TCCTCCTTCGCCGCCACCCCTGCATCTGCATCCAACCACGCTGCACCGCCTCTGCCTCTG CCTCTCCTGCATCAACAACAACAACAGCATCAGCATCAGCATCAACAACAACATCAAGCC GCCGCCGCTGCACCCGACGCCGCCGCCGCCGCCGCCGCCGCCGCCATGTACCACCACCTC GCGGACATGGGGCAGCCATCTCTGATATCAGAGTATGACCTGGGAGCAGAGGGCGACCTG TTCAAGGCTCCTGAGCCCATAGTCGAGGAACCGCTGCTCGCCCTCGACCCGGTCGCGGCC GCCATCTCCATGATGTCCGGCGGGGAGGACGACAACGCCATCGGTGCCTCAGACATGGGC CTGAGCGAGGCGCTGTACGAGTGCGAGAAGGAGCTCATGGAGGAGTCGGCGATCGAGGAG ACCATATCGGAGCTGCTGGACGTCAAGATCCCCATGCTGCAGGTCGAGGACGTCCCCGGG GAGCTCAGGGCCTCCTCCTCGTCG
Homology of Contig U35_2569 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |