barSeed - Barley Seed Development Database

Probe CUST_25300_PI390587928

Source Contig U35_2583

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25300_PI390587928	Hv_44K_v2	CTATGAAAATGGCATATCTATCAGGCCCATTGCCTACCAGCTCTGAATTTTGACTGGTGA	1120	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.668	2.623	1.074	0.830	0.328	0.422
Raw	706.101	1062.385	388.704	486.128	65.696	91.645

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66683.2	3840	2e-24	3762 - 3821	100	60 / 60	plus	ABC06000
JLOC1	JLOC1_43974.1	3882	8e-25	3656 - 3715	100	60 / 60	plus
Harvest21	ABC06000	1209	3e-25	1121 - 1180	100	60 / 60	plus	ABC06000
Harvest35	U35_2583	1209	3e-25	1121 - 1180	100	60 / 60	plus

Contig Sequence (1209 bp)

>U35_2583 1209 Hv_44K_v2
CTGCCTGCCGCGAGAGTCCTCCACTCCACAACAACCATCGAGAAACAAGCGCCTAATTCT
TCTCTCGCGCCATGGCGTCCACCAATGGCGGCTTTGCCAGTCCTCTCGCAGCGACCGTTC
CGGTTGAGGCGGTTCTCTTTGACATCGATGGCACTCTGTGCGACTCAGACCCTCTTCATC
ACGTCGCTTTCCAAGAAATGCTTCTTGCGATTGGGTACAACAACGGCGTGCCCATAGACG
ACGAGTTCTTCATAAACAACATTGCTGGAAGGAGCGATGTTGAAGCTGCCCAGAATTTGT
TTCCAGACTGGCCTCTCGAAAAGGGGCTGAAATTCCTAGAGGAGAAAGAGATCAAATACA
GAAGTTTGGCAATGGAGCGCCTAGAGCCTGTAAAGGGACTTGGCAAGCTGGTTCAGTGGG
TGAAAGATCACGGCTACAAACGTGCTGCAGTAACCAATGCCCCAAGGATCAATGCAGAGC
TGATGATCAAACTTCTTGGTCTATCAGACTTCTTCCAGGCCGTGATAGTTGGAGGTGAAT
GCGAGAAGCCAAAGCCCGCACCCTTCCCATACCTGAAGGCCCTCAAGGAGCTCGAAGTAT
CTGCGGCACACACCTTTATCTTCGAGGACTCTGCTTCAGGGACGCGTGCGGGTGTTGCTG
CGGGGATGCCCGTCGTCGCCGTGTTGACGAGGAACCCGGAGAAGTCCCTAGAGGAAGCCG
GGGCCGCATTGATCGTCAATGACTATGAAGACCAGAAACTGTGGAACGCGCTCGAGGAGA
TTGACAGGGAGGAAGCGAAGCTAAAGAGTGGTGGGGCATGAGACGATGATGGCGACGAAC
AGTTCATTAGACCACTGCAAACTTACCCATTCTTATTATTTATAAGGGAATCTGCGCCCT
GAAGTTATTATGGTAGGACAGAGCTCATCTAGGTATTTTGAGCTTTTTAGTTTGGTATAT
GTGTTTGTTTCTTGTTGTCTATTCCTTCTGTACCTAAATACTTGTAGTTGGGGAGCTTCT
GGACCTAAATATTTGTAGTTGGGGAGGTACAGAGGGAGCAGGAGAGAAGCAAATAAGAAA
CTTTTGTGCCCATGACATGAGATTGTTCGGTTGATGGGGCCTATGAAAATGGCATATCTA
TCAGGCCCATTGCCTACCAGCTCTGAATTTTGACTGGTGAGCACTCTGTTTAAAAAAAAA
AAAAAAAAA

Homology of Contig U35_2583 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g24230.1	253	7e-131	protein\|haloacid dehalogenase-like hydrolase family protein, putative, expressed
Brachypodium v1_2	Bradi3g13680.1	251	6e-138
Arabidopsis v10	AT2G38740.1	244	2e-75	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr2:16194639-16195995 REVERSE LENGTH=244