barSeed - Barley Seed Development Database

Probe CUST_25299_PI390587928

Source Contig U35_2584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25299_PI390587928	Hv_44K_v2	TGTAGAGATTGTGAAGCAGACGCTGGTCAAACAAAACACTGGGCAAACAAAAAGTGATGA	674	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9063.4	1006	2e-24	883 - 942	100	60 / 60	plus	ABC12319
MLOC	MLOC_9063.3	2298	2e-24	2086 - 2145	100	60 / 60	plus	ABC12319 ABC14289
MLOC	MLOC_9063.5	921	2e-24	802 - 861	100	60 / 60	plus	ABC12319
MLOC	MLOC_9063.1	2307	2e-24	2131 - 2190	100	60 / 60	plus	ABC12319 ABC14289
MLOC	MLOC_9063.2	2431	2e-24	2220 - 2279	100	60 / 60	plus	ABC12319 ABC14289
JLOC1	JLOC1_5953.4	2318	8e-25	2107 - 2166	100	60 / 60	plus
JLOC1	JLOC1_5953.3	2315	8e-25	2104 - 2163	100	60 / 60	plus
Harvest21	ABC12319	1023	3e-25	675 - 734	100	60 / 60	plus	ABC12319
Harvest35	U35_2584	1023	3e-25	675 - 734	100	60 / 60	plus

Contig Sequence (1023 bp)

>U35_2584 1023 Hv_44K_v2
GAGGAGACGGAGGTAGCCCAATTCGATCCCCATGTCGAGCCGGCGATCGTGGTCATTGAT
CCTGGTCAGATTACCTGGCGCGCCTTGGACCTCAAGTTCCCACAGGAGGAGACCGAATCA
GACTGGAGCGACTGGAGCGACGGTGATGCCCAAGTGCTTGACGTGGAGGACAAAGATTGC
ACAGTAGTTGATGGCGGTGATGATGACGAGGAGTGCAATGGCCAAGTGCTTGACGAGGAC
AAGAATACAAACAGCAAGATAATCTGCCCAGGAAAGCTCTATCCCGCGAGCAAAGCAAAG
GAAATTGACCGGGAATGGATTCATAGGCACGCCGATCAGATGGGAGAATACTGGGACATG
TGTGATGACATTCTGGACCGGGAGGACGACGATGATACCCCCTTACCTCCTTTTCCTCTG
AAATTGCTCCCTCCCACAACAGCTCTATGCGCTCTTGATGCAAAATGCTACCACCGCGTT
TACAAGACCCACGACACTTCTACCACTCCATCAATTCTGGGATATCGCGAGCCACAAGAG
ATGCTACAGTTCTTTTCTATGAGGTTATCAAGCTCTGCGCTCTCCTATCCTGTTAGTGTG
TATGGAATATTTGCCGTTCAGGATGACTTGGACCAGCGACGCAACTATGTCTTTAACTAT
CCTAGAGATGTTGCTGTAGAGATTGTGAAGCAGACGCTGGTCAAACAAAACACTGGGCAA
ACAAAAAGTGATGAGCAACAAGGCTTGGCCGATGATGTTAGTGTGGAGTCTGCTCCAACA
ACTGGACCGATTAAGCACACCAATGAAGATGACACGAAGGCTCCTTACTCGGATGCCACG
CGGATGCTCTTTGGACTACGATATGGACATGAAGGCATTTGTTTTAGTGTCAAATATTAT
TTACTAATGCCCGCAAAGTATCGTTGTGTATTATATTTGCTATGGATCTATGTATGTATG
GATGCTATGGAATTATATGTATATATGGATGCTATGGAATTATATGTAAAAAAAAAAAAA
AAA

Homology of Contig U35_2584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None