barSeed - Barley Seed Development Database

Probe CUST_25291_PI390587928

Source Contig U35_2592

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25291_PI390587928	Hv_44K_v2	TGTTGTAAATGCCAGTTTCACCTAAAGGAGAGCTTTGCTTGATTTCAACACATCAAAAAA	2027	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362944	2189	3e-21	2046 - 2099	100	54 / 54	plus	ABC06102
MLOC	MLOC_43595.1	1955	3e-21	1875 - 1928	100	54 / 54	plus	ABC06102
JLOC1	JLOC1_28183.1	1879	2e-21	1784 - 1837	100	54 / 54	plus
Harvest35	U35_2592	2098	3e-25	2028 - 2087	100	60 / 60	plus

Contig Sequence (2098 bp)

>U35_2592 2098 Hv_44K_v2
CTCACCACTCGCAAACCCATCTAAATCTCACCCCCTAGCCACCCACCCCACCACCACCAC
CGCGATGGCTCCGGCGATGGGGCTCAAGCGGCCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GACGGCCACGCAGACCATCACGCTGCCCCCGCAGGGGGTCGCCGTGAGGGACGCGGTGCG
CGGCGCCGTGCGGGACGCCGAGGCGCCCCCGAGGGCGCCGGCGACGCCGGCCCCCGCGGC
CGCCGTCGACGGGGTCCTGTGCTTCGAGGAGGTGGAAGGCAGGCGGTGGAGCTACGTCGT
CGAGGGCGCCGCCTCCTCCGCCGGGAAGACGGGGAGGGTCAGCGCCAGGGCCAGGGGCGG
CTCCGCCACGCCGGTGGGGGCCACCTTCAGGGCCGTGCCGCTCCAGTCCCCGCTGCCGCC
CGCCGAGGAAATTATGTCCTTCATAAGGTCATATGTTGTGCCTGAAGGTTTTCCAGACAG
CGTGACTCCTTCATATGTTCCATACATGACATGGAGGGCACTGAAGCATTTCTTTGGCGG
AGCAATGAGTGTATTTACAACAAGAGCCTTGTTAAACTCCGTAGGAGTCTCACAAAGCAG
GGCTACGTCTGGTGCTGTGGCTATTAACTGGATACTCAAGGATGGTGCTGGGCGTGTCGG
AAAAATGCTTTTTGCGCGTCAAGGGAAGAAATTTGACTATGACCTCAAGCAGCTCCGCTT
TTCTGGGGATCTCATGATGGAACTAGGAGCTGGGATAGAGTTAGCTACTGCAGCGTTCCC
TCAACTTTTCCTACCGTTGGCTTGCATGGCTAATGTTGTCAAGAATGTTGCTGCTGTTAC
ATCGACCTCAACCCGCACACCGATTTACAAGGCATATGCAAAAGGAGAAAATATTGGAGA
TGTTACTGCTAAAGGAGAAAGTGTTGGGAACATCGCTGATCTGTTGGGTACTGGTATGAG
CATTCTAATGTCCAAGAGGAATCCATCATTGGTGGCTTCATTTGCAGTCTTGTCTTGTGG
ATATCTGCTTAGTTCATATCAGGAGGTGAGATCTGTTGTGTTGAACACGCTAAATACGGC
AAGATTCACCGTGGCAGTGGATTCCTTCATAAAGACCGGGCATGTTCCTTCATTGAAGGA
AGGGAACTTAGAGGAGACAATATTTAATCCACCTTGGAGGCATCAACCTGTGGCGATAGG
ATCAAGATTTGGAGAGGCATTTCAGGAACCTGCTTCATTTGTTGCTACAAGGCCTTTGTT
CGAGGATGAGAGGTACATTGTTACGTACAACCCAGCAAAGGACAAGGTTTATGCTTTGCT
CAAGGACCAAGCGAAGCAAGATGACATTCTCAAAGCTGCATTCCACGCACATGTGTTGCT
GCATTTTATTAATGCATCACATGCTAATCTGAAAGCACGGAAGCGCATGAACTCTGATCA
GGGGTCATACCAGTATGTGAACCCAAACCCATTGAACATGGACTTTCTAGCACACATTGA
AGAATCTTGCAAGATTGTTACATCGTCGTATGGAGTATTCAAGAGGAAAGCAAGAGAACA
GGGATGGATAATGTCTGACTCGCTACTGAACCCGGGCCGTGCTCGGCTCTGCGGAGTAGC
ACCACAGTGATATAAGCAAGATATTTCTTTCGTATATTGGATCTGAGCCTATGTGAGCCA
GCACGTTATTTAGCACAGACCAATTTCATTCAGTTCGAGTACTCGGCGTGCACCAAACTG
TGGTGAGACTAGTAGGAGGGATTGTAGGCTGCAGCTTTGGTACCATCTCAACTCTATAGA
GCGGTTTGCTGGCTGGCTCATGGCGAAGGGTCTTTAACTAACTGAAAAAAACTGACTAAC
AAGCTCTTGTATATGCGTCTGGTAATGTATAATGGAGTCCGATATCCGACCTATTTGTAG
CCGGTCTAGGTCTCTATCGGCTGAGTTCTTGTACGAGTCTGACTGCAACTTTTTTTCCCC
GGTAACTTTGCGGTGCTGTGGTTTCTCTTTGTTTCCATGACTCCAGTTGTTGTAAATGCC
AGTTTCACCTAAAGGAGAGCTTTGCTTGATTTCAACACATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g34650.1	524	protein\|DUF647 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g25097.2	522
Arabidopsis v10	AT5G49820.1	497	\| Symbols: EMB1879, RUS6 \| Protein of unknown function, DUF647 \| chr5:20246753-20249432 REVERSE LENGTH=497