barSeed - Barley Seed Development Database

Probe CUST_25287_PI390587928

Source Contig U35_2596

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25287_PI390587928	Hv_44K_v2	GGAGCACACGGCCATATTCTTCAGAGTCTTCAGGCACGACCAAAAGTACAAAGTTCTCAT	1290	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374957	1864	2e-24	1450 - 1509	100	60 / 60	plus	ABC04470 ABC06786 ABC06787
Harvest21	ABC06785	645	3e-25	586 - 645	100	60 / 60	plus
Harvest21	ABC06787	1428	6e-22	846 - 905	97	58 / 60	plus	ABC06787
Harvest35	U35_2596	1350	3e-25	1291 - 1350	100	60 / 60	plus
Harvest35	U35_2595	959	6e-22	377 - 436	97	58 / 60	plus

Contig Sequence (1350 bp)

>U35_2596 1350 Hv_44K_v2
GCCGACCAATTTGCTGGTTCGGATGATGGATATGGTTACTTCCGGATGGTGCTGAGCAGA
TCCGAATGGTCCGATGTACCACAACGGCGTCTACCACATGTTCTACCAGTACAATCCGCT
GGGCGCAATGTGGAGTCCCGGCAACCTCTCATGGGGTCACTCCGTCTCACGCGACCTCGT
CAACTGGGACGCCCTCGACACCGCGCTCGACCCCACCGCCCCCTTCGACTCCGACGGCTG
CTGGTCAGGCTCCGCCACCATCCTCCCCGGCGGCATCCCGGCCCTGCTCTACACCGGCCG
CATCAACGCCACCAATAAGGAGGTGCAGGTGCAGAACGTCGCCTTCCCCAAGAACCCTGC
CGACCCGCTGCTCCGCGAGTGGGTGAAGCCCGCCTACAACCCCGTCATACCGCTCCCCGC
CGACGTCCCCGGAGACAAGTTCCGCGACCCTACCACGGCCTGGGTAGGCCGCGACGGCCT
ATGGCGCATCGCCGTCGCGGCCAAGGTCGGCGGCATCAACGGCATTGCCTCCACGCTCAT
CTACCGGAGTAAGGACTTCCGGCAATGGAAGCGGAACGCCATGCCGTTGTACACGTCGCG
TGCTGCGGGGATGGTCGAATGCCCGGACCTGTTCCCGGTGGCGGAGCCTGGCGTGGAGGA
GGGGCGACTCGGAACAGCGAGCGGCGCTGTGCCTGTGAGGCACGTGCTGAAGCTGAGCGT
GATGAACACGACCGTGGATTACTACGCGGTCGGGAGGTACGACGATGTGGCGGACACCTT
CGTGCCGGAGGTGGACGGCGAGCGCAGCGTCGACGACTGCCGGACCTGGCGCCGATTCGA
CTACGGGCACGTCTACGCGTCCAAGTCCTTCTTTGATTCGCGCAAGAACCGGCGCGTGCT
ATGGTCGTGGGCCAGTGAATCCGACAACCCGAATGACGACCTCGCCAGGGGTTGGTCCGG
CGTTCAGACAGTTCCGAGGAAGGTATGGCTGGACGGAGATGGCAAGCAGCTACGACAGTG
GCCAATCGAGGAGATCGAGACGTTGAGGAGCAAACGAGTCGTCGGCATGCTCGGAACGCA
GGTGAATGCCGGCGGCGTGAACAAGATCGTTGGTGTGGGCGCGCAGGCCGACGTGGAGGC
CATCTTCGAGATCCCGTCCCTGGAAGAGGCAGAAACCTTCCAGCCCAACTGGCTGCTGGA
CCCCCAGAAGCTCTGCGCGGAGAAGGGCGCGTCCGTGCCGGGCGGGGTCGGCCCATTCGG
GCTGCTCGTCATGGCCTCCGGTGACTTGCAGGAGCACACGGCCATATTCTTCAGAGTCTT
CAGGCACGACCAAAAGTACAAAGTTCTCAT

Homology of Contig U35_2596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g08072.1	596	0.0	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi5g25270.1	620	0.0
Arabidopsis v10	AT3G13790.1	584	4e-135	\| Symbols: ATCWINV1, ATBFRUCT1 \| Glycosyl hydrolases family 32 protein \| chr3:4533084-4535831 REVERSE LENGTH=584