barSeed - Barley Seed Development Database

Probe CUST_25251_PI390587928

Source Contig U35_17323

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25251_PI390587928	Hv_44K_v2	TAAGATGTGGCATTGGGACATGAGGTTGCTGTCATTTGACCGCGTAATAAAATGCCGCTT	1431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354990	1643	2e-24	1447 - 1506	100	60 / 60	plus	ABC10713 ABC42036
MLOC	AK360895	1412	2e-24	1348 - 1407	100	60 / 60	plus	ABC10713 ABC42036
MLOC	MLOC_57134.1	1567	2e-24	129 - 188	100	60 / 60	minus	ABC10713 ABC42036
JLOC1	JLOC1_36983.1	1322	8e-25	148 - 207	100	60 / 60	minus
Harvest21	ABC10713	1488	3e-25	1407 - 1466	100	60 / 60	plus	ABC10713
Harvest35	U35_17323	1530	3e-25	1432 - 1491	100	60 / 60	plus

Contig Sequence (1530 bp)

>U35_17323 1530 Hv_44K_v2
CTGAAGCAACGTGCGGAAAACATCCAGAATTCCAGATCCCGATCTAGCGCACTACACTAC
ACTCCCCTCATCATCATCAAGAAACAAAACAAACAGTGCGCGCTCCACTCCCCATCGCGC
AACCCGGCGACGAACGGCCGCGCCCATCGAGCGCACCGCCGGCGCCCTCCCCTGCACTCC
GCTCTGCGTCTTGTTGCCGTAAACCACTCTGCTATTAGTAGTGCTGTGCAACGTCCCCGT
GCGACAAGCCAATGATGGCCAGAGCTGCACTTCTTCCTGTTGCGTTGCTGCTGTGCCTTG
CACTGGCTGGCAGCGCCAATGCTGCACGGAAGTCAGCGGTCGGATTCTATGAACTCAAGA
ACAAGAAGGGGGATTTCTCCATCAAGGTCACCAACTGGGGCGCTGCCCTCGTCTCTGCCA
TTGTGCCTGATAGCAAAGGGCACTTGGCTGATGTTGTCCTTGGGTATGACACTGCTGCTG
AATATATGCGTGGCTCTGCTTCATTCGGAGCGACGGTTGGGCGTGTAGCCAACAGAATCG
CCAATGCCCGCTTTGTTCTTGATGGGAAAACCTATCACCTCCTCCGTAACGATGGAAACA
ACACGATTCACGGAGGCCCCAAGGGGTTCGGCAAGGTCATTTGGATGGTGAAGGACCATG
TGAGCCATGGTGACTCCCCATACATCACCTTCTACTACCACAGCTTGGACGGAGAACAAG
GATTCCCAGGCGCCCTCGACGTGTACGTGAAGTACCAGCTCTCCCGCCAGTACGACCTGA
GCATCCGCATGAACGTAACCGCGAGGAACAAGGCGACGCCGGTGAACCTCGCAAACCACG
CGTACTGGAACCTCGCCGGCCACGGCAGCGGCGACATCCTCAAGCACGAGCTCCAGATGT
TCGCCTCACACTACACCCCCGTCGACGGGTCCATGATACCGACGGGCGAGGTCGCGCCCG
TGGCCGGCACGATGTACGACTTCGGCAGGCGGATCCCCGTGGGCACGAACATGAAGATTG
TCCCAGGCGGCGGCGGCGGGTACGACATGAACTACGCCGTGGACGGGCAGCAGAACGCGA
TGCGGCCGGTGGCGCGCGTCCGGGAGCCCAAGTCCGGGCGGGCGTTGGAGCTGTGGGCGA
ACCAGCCCGGGGTGCAGTTCTACACCGCCAGCTGGCTCATCAACGAGAAGGGGAAGGCCG
GGAAGGTGTACGGGCAGTACGGCGCGCTGTGCCTGGAGACGCAGGCCTACCCTGACGCCG
TCAACCACCCCAACTTCCCGTCGTCCATCGTGAGGCCCGGCCAGGTGTACAAGCACGACA
TGGTCTTCAGGTTCTCCTACCAGGCTACCTACGACGCATGAGACGTCGTAGTGGCTGATC
ATCCGTCGTTTTCTTGTGGACTGTGCTGTAACATGTTGGTAGCTTGTGTAATAAGATGTG
GCATTGGGACATGAGGTTGCTGTCATTTGACCGCGTAATAAAATGCCGCTTCAACTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17323 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36600.1	379	2e-160	protein\|aldose 1-epimerase, putative, expressed
Brachypodium v1_2	Bradi5g12250.1	364	0.0
Arabidopsis v10	AT5G15140.1	490	4e-122	Galactose mutarotase-like superfamily protein \| chr5:4908686-4910670 FORWARD LENGTH=490