- Probe CUST_25234_PI390587928
- Source Contig U35_50272
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25234_PI390587928 | Hv_44K_v2 | ATGTTGGTAAAGAGGATAGGAGAAGCACCTGCTCTTGAAGTTAGAGCAACAGGAATTCCT | 600 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK250051.1 | 2180 | 7e-23 | 615 - 674 | 98 | 59 / 60 | plus | ABC03391 ABC04970 ABC39054 ABC39160 |
| MLOC | AK251544.1 | 2302 | 7e-23 | 737 - 796 | 98 | 59 / 60 | plus | ABC03391 ABC04970 ABC39054 ABC39160 |
| MLOC | MLOC_48661.2 | 913 | 7e-23 | 593 - 652 | 98 | 59 / 60 | plus | ABC03391 |
| MLOC | MLOC_28516.4 | 625 | 3e-21 | 288 - 347 | 97 | 58 / 60 | plus | ABC03391 |
| MLOC | MLOC_28516.3 | 699 | 3e-21 | 295 - 354 | 97 | 58 / 60 | plus | ABC03391 |
| MLOC | MLOC_28516.1 | 877 | 3e-21 | 479 - 538 | 97 | 58 / 60 | plus | ABC03391 |
| MLOC | MLOC_28516.2 | 873 | 3e-21 | 475 - 534 | 97 | 58 / 60 | plus | ABC03391 |
| JLOC1 | JLOC1_31226.1 | 410 | 4e-23 | 183 - 242 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_19125.1 | 411 | 2e-21 | 308 - 367 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC52348 | 660 | 3e-25 | 601 - 660 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03391 | 2310 | 1e-23 | 595 - 654 | 98 | 59 / 60 | plus | ABC03391 |
| Harvest35 | U35_50272 | 660 | 3e-25 | 601 - 660 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15245 | 2327 | 1e-23 | 603 - 662 | 98 | 59 / 60 | plus |
Contig Sequence (660 bp)
>U35_50272 660 Hv_44K_v2 CATCTCGCTCGCTCTCCCCGAGGGCTGCCGGTGAGCGGCTCCTTCACGGCCATGGCGAGA GCTGCGTTTGGGAGACTGGGACATGACGATCCCTAGGCACCCTCTCCGCCTCTCCACCAC CGCCGCGCCATGTTCGTGTTCAGGGGGAAGTCCGTGTTCAACCTGAGGAAAAAGCTAGCC CGGCGGCTGGAGGCCCTCATGGACGTCTCCAACCTCGCCATGTGCGTCGAAGCCGGTACT TTCGGGCGTCTTACCCCGCTCGTCGTCGACCTGCCCCGCAGCCGCCAGGAACTCCACATC GTCGTCTTCGCAGGCGGGACGCCAGGCCAGATGACCCAGATTGAGAGGGAGAATGCCACA GCAGAGGCCATGTCCAAGTACTTCATAGGTAGCGTACTGAGTGGTGGAGGCAGTGTGCCT TCTCCTCAAGCATCCGCTGCGGCTTGGCAGCCGATGGTGAATGAAATGCAAAAGGGCGCC CTTTCTACCCGCCTAGGCATTCCGTTGATCTACGGTATTGATGTTGTGCACGGTCACAAC AACGTGTACAAAGCTACTATCTTCCCACATAATGTTGGCCTCCGAGCTACCAGGGACCCT ATGTTGGTAAAGAGGATAGGAGAAGCACCTGCTCTTGAAGTTAGAGCAACAGGAATTCCT
Homology of Contig U35_50272 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |