barSeed - Barley Seed Development Database

Probe CUST_25209_PI390587928

Source Contig U35_15908

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25209_PI390587928	Hv_44K_v2	GCTGCATGGTTTCAGTTGCTGTATCAATTTCATTTAGTACAAGAAACAAGCAAAATCGAG	1997	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75626.2	5586	2e-24	4111 - 4170	100	60 / 60	plus	ABC04555 ABC16978
MLOC	MLOC_75626.1	5076	2e-24	2137 - 2196	100	60 / 60	plus	ABC04555 ABC16978
JLOC1	JLOC1_50455.2	5439	8e-25	1385 - 1444	100	60 / 60	minus
JLOC1	JLOC1_50455.1	5561	8e-25	1507 - 1566	100	60 / 60	minus
JLOC1	JLOC1_50454.2	2486	8e-25	2216 - 2275	100	60 / 60	plus
JLOC1	JLOC1_50454.1	2388	8e-25	2118 - 2177	100	60 / 60	plus
Harvest21	ABC04555	2071	3e-25	1986 - 2045	100	60 / 60	plus	ABC04555
Harvest35	U35_15908	2083	3e-25	1998 - 2057	100	60 / 60	plus

Contig Sequence (2083 bp)

>U35_15908 2083 Hv_44K_v2
GTCCAGTCCAGTCCAGTCCAGCGTGCTCGCTCCGACCGCCCGTCCGATCGAGCAGAACCG
GCGCGAGCAGCGCAGTCACGCGCCATGAAGTGCACAGTGGTGGCACTCGTGCTGCTGGTG
GCGGTGCAATGCCTCGTGCTGGGCGCCGGCCCGGCCGCGGCGGCGAAGGCGCGGCGGACG
CGGCAGGGCGACTACCTGAACCGGCTGCGGGGCTCGCCATCCTCCCGCGCGTCGTGGGAG
TCGCTGGCGGCAGTGGAGGAGCAGACGACGACGAAGGCGGCGGGTAGACCCGCGCCGGTG
GCCGCTGCGGTGGAGGCTGGGAGGAAGGAGGCCGACCGCGTGGAGGCGCTGCCCGGGCAG
CCGCGCGGCGTGGACTTCGCGCAGTACGCCGGCTACGTGACGGTGGACGCGGCGGCCGGG
CGTGCGCTGTTCTACTACCTCGCCGAGGCCGTCGGCGGCAACGGCGACAAGCCCAAGCCC
CTCCTCCTGTGGCTCAACGGTGGCCCCGGGTGCTCGTCGCTGGGGTACGGCGCCATGGAG
GAGCTCGGCCCGTTCCGCGTCATGAGCGACGGCAAGACGCTCTACAGCAACCCCTACTCC
TGGAACCACGCGGCGAACGTGCTGTTCCTGGAGAGCCCGGCGGGGGTGGGGTACTCGTAC
TCGAACACGACGGCGGACTACGGCAGGAGCGGGGACAACGGGACGGCGGAGGACGCGTAC
CAGTTCCTGGCCAACTGGCTGGAGCGCTTCCCGGAGTACAAGGGCCGCGAGTTCTACATC
ACCGGCGAGAGCTACGCCGGCCACTACGTCCCGCAGCTGGCCCACGCCATCCTCCGCCAC
GCATCCCCGGCCATCAACCTCAAAGGCATCATGATTGGGAACGCGGTGATCAACGACTGG
ACGGACAGCAAGGGCATGTACGACTTCTTCTGGACGCACGCGCTCATCTCCGACGAGACG
GCCGACGGCATCAGCAAGAACTGCAACTTCACGGCCTACGGCGCCGGCGTGGCGTCGAAC
GCGCTCTGCGACGCCGCCTCGGACGAGGTCGGCGAGAGCCTCGCGGACATCGACATCTAC
AACATCTACGCGCCCAACTGCCAGTCGGAGAAGCTCGTCACGCCGCCCATCGCCCCCTCG
ATCGACAACTTTGATCCGTGCACGGACTACTACGTGGAGGCGTACCTCAACCGGCCGGAC
GTGCAGAAGGCGCTGCACGCCAACGTCACCCGCCTCGACCACCCCTGGTCAGCCTGCAGT
GACGTCTTGACACGCTGGGTCGACAGCGCCAAAACTGTCCTGCCTATTATCCAGGAGCTG
ATGAAGAACAGCATCCGGGTCTGGGTTTACAGTGGAGACACTGATGGGAGAGTGCCCGTC
ACTTCCAGTAGACTCTCTGTCAACCAGCTCCAGCTCCCTGTGGCGGCAAAATGGAGGCCA
TGGTTCAGCAGCACCAAGGGTGCCGGAGAGGTGGGTGGATACATTGTGCAGTACAAGGGC
GACCTCAGCTTGGTAACTGTTAGAGGAGCAGGCCATGAGGTCCCCAGCTACCAGCCGCGG
CGAGCGCTTGTGCTTGTCCAGAATTTCCTCGCAGGCAAAGCGCTCCCTGACTGCAAAGAA
TGCGAACAGGATTAGCAAAAGAAAAGAAGGTTTTACACTAAAAGATAGTACACCAGCAGG
TTTCACAGGTTGTATCATTTGATTCAGTACAAGAAACAAGCAAAATCAAGTAAAGTTAGA
TACAGAAACCCATCATCAACCCATGCACTCCGCAGACCATGTAACTGCAGGTCAGCAAAT
GCTTTCATATAGATAGGAAAGTGTATGGTGTAATTTGTTAAGTATGAACATCTATGCCAA
AATGGCATGTTGCAATACTGGTGCCTCCAAAGGATGCTGCGCCTCCATGTGTTACAATGA
CTTACCAGGAGAATGAAATTCATATATTGGCTCCAAAAAAAAAAAAAAAAAGGATACTGT
AAACTCTGTAATCACAAGCTGCATGGTTTCAGTTGCTGTATCAATTTCATTTAGTACAAG
AAACAAGCAAAATCGAGTGAAATAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15908 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46350.1	525	0.0	protein\|OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi1g19230.1	519	0.0
Arabidopsis v10	AT3G63470.1	502	2e-172	\| Symbols: scpl40 \| serine carboxypeptidase-like 40 \| chr3:23438561-23440862 FORWARD LENGTH=502