barSeed - Barley Seed Development Database

Probe CUST_25206_PI390587928

Source Contig U35_15911

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25206_PI390587928	Hv_44K_v2	GCATCTGGATAACATTTGAAGCATCGGGAGTACCAATTATTGGGAATCTGGATGAAAAAA	1439	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52740.3	1476	3e-22	1246 - 1301	100	56 / 56	plus	ABC01671
MLOC	MLOC_52740.2	1729	3e-22	1499 - 1554	100	56 / 56	plus	ABC01671
MLOC	AK355873	3244	3e-21	1004 - 1063	97	58 / 60	minus	ABC01671 ABC04437 ABC04438 ABC08937
JLOC1	JLOC1_33814.1	1754	1e-22	1530 - 1585	100	56 / 56	plus
Harvest21	ABC01671	676	3e-25	16 - 75	100	60 / 60	minus	ABC01671
Harvest35	U35_15911	1512	3e-25	1440 - 1499	100	60 / 60	plus

Contig Sequence (1512 bp)

>U35_15911 1512 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAGAAGCGCCAAGGCAAGAGCACTGTCCCGTGTCTTCCTC
TCCACTCCACTCCACACTCCCACTCCACACCCCCACTCTCCCTCCATGGATTTTACAGTC
TCACCACCACCGTCCCCCACCTTCTATAAAGCATCCGGGGCCAAGAACCTCCGGTAAACC
GCGCGTCATTCCCCTCCAGCCAGCCGAGATGCCGCAGCGCGGCGGCGCCCCCCTCCTCCT
CCTCCTCGCCCTCGCCGCGGCGCCGCTCGCCATGGCGTGGCGCCCGTGGCCGCCGCGCGA
CGCCGTGGCCGCCCTCGGCGCGTCCAAGAAGTTCGAGGGGTCGTCCGACCTCGTCAAGCT
CGAGTACCACATGGGCCCCGTCCTCGCCGCCGACATCACCGTCCACCCGATCTGGTACGG
CGCCTGGCCGGCCGACCAGAAGCGCACCATCCGCGCCTTCCTCCGCTCCCTCTCGCCGCA
GTCCCCCGTCCCGTCCCCGTCCGTCGCGGACTGGTGGCGCACCGTCCGGCTCTACACGGA
CCAGACCACGGCCAACGTGTCGGCCGTGGTGGCGCTCGGGCAGGAGAAGTGCGACGTGCG
GATGTCGCGGGGCGCGTCGCTGTCGAGGATGGACATCCAGTCCGTGGTGAAGGACGCGGT
GACCGCGCGCACCAGGCCGCTCCCGGTGGACGCCGGCGGGGTGTACCTGGTGCTGACGTC
CCCGGAGGTGCGCGTGGAGAGCTTCTGCGGGCAGGTGTGCGGGTTCCACTACTTCACCTT
CCCGTCGGTGGTCGGGTACACGCTGCCGTACGCGTGGGTGGGCAACTCGGCGGGGCGGTG
CCCGGAGGTGTGCGCGTACCCGTTCGCCATCCCGGCGTACGTGCCGGGGCGGCGTCCCGA
GGCGCCGCCCAACGGCGACCCAGGCGTGGACGGCATGGTGAGCGTCATCGCGCACGAGCT
GGCCGAGATGGCGTCCAACCCGCTGGCCAACGCGTGGTACGCCGGCGGGGACCCGTCTTT
CCCGACGGAGATCGCCGACCTCTGCGAGGGCATCTACGGCACCGGCGGCGGCGGCGCGTA
CACGGGGCAGCTGCTCACCGACGGCCGGTCCGGCGCGTCCTACAACCTGAACGGCGTCGG
CGGGCGCCGGTTCCTGGTGCAGTGGGTCTGGGACCCCTACCGCAGCTACTGCTCCGGCCC
CAACGCGCTCGACCACCACTAGCTTTTCGTTTCTCTTTCACCATCGTCGCCGCATCTAGC
GCTAGCGGTCGTCGTAGTATTCCTCCAACTCCAGCATAGCATTGGATTCCTTCCTCGGGA
CATCCATGGCCGGTCCTCCTGTATAGAGTTCCGAAGCATGGTGGTCCGGTCGCCGGTCAG
TGAGCTCATGATTTGCTGACGATGTTTTGGGCTTTCATTCAAATTCGATGTCATTTTGTG
CATCTGGATAACATTTGAAGCATCGGGAGTACCAATTATTGGGAATCTGGATGAAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_15911 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04250.1	349	8e-173	protein\|phosphate-induced protein 1 conserved region domain containing protein, expressed
Brachypodium v1_2	Bradi1g50140.1	350	1e-174
Arabidopsis v10	AT5G51550.1	337	4e-128	\| Symbols: EXL3 \| EXORDIUM like 3 \| chr5:20939793-20940806 REVERSE LENGTH=337