barSeed - Barley Seed Development Database

Probe CUST_25205_PI390587928

Source Contig U35_15912

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25205_PI390587928	Hv_44K_v2	AGGATATGTTCTATCAAAACCACCAATGCTGTCATGAACAATGTTTATAGGTCGCTTTAC	233	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27545.1	469	7e-23	283 - 342	98	59 / 60	minus	ABC04006
MLOC	MLOC_27545.2	432	7e-23	210 - 269	98	59 / 60	minus	ABC04006 ABC41313
MLOC	MLOC_8530.1	1538	7e-23	1265 - 1324	98	59 / 60	minus	ABC04006
JLOC1	JLOC1_18594.1	621	4e-23	143 - 202	98	59 / 60	plus
JLOC1	JLOC1_5669.1	1550	4e-23	215 - 274	98	59 / 60	plus
Harvest21	ABC04005	485	3e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_15912	486	3e-25	234 - 293	100	60 / 60	plus

Contig Sequence (486 bp)

>U35_15912 486 Hv_44K_v2
CTCTCATAGTCCAGGCCTTGGAATCAATGACAATAACGCCCTCAGACCTGGAGTATATGT
CAACTTCAATGTGGAGAAGTTATGTCCCTAACTTCAGAAATGCTTATGACTGGTAGGCAG
GGGCACTCTCATAGTCCAGGCCTTGGAATCAATGACAATAACGCCCTCAGCCTGGAGTAT
ATCTCAACTTCAATGTGGAGAGCAGTGCGCAGGAATGGAAAGAGGAGAGCAAGAGGATAT
GTTCTATCAAAACCACCAATGCTGTCATGAACAATGTTTATAGGTCGCTTTACTCGAGAA
CTAGCTAAGACAGCTGGGCATGTTCTTGCAACGGATTTCATTGAAAGTGTGATTAANAAG
AATGAAAGCATAAATGGCCATTACGAAAATGCATCCTTCATGTGTGCTGATGTTATATGT
CCAGACCTGGTGATTGAGGACAACTCGATTGATCTCGTATTTTCAATCTGGCTACTGATG
TATCTT

Homology of Contig U35_15912 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None