barSeed - Barley Seed Development Database

Probe CUST_25204_PI390587928

Source Contig U35_15913

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25204_PI390587928	Hv_44K_v2	TACTGATATATTCCGCCTATGTTTGAAGTAAATAAAAAACCACTTTGTGGCTTTGGTACC	1926	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366322	2002	2e-24	1943 - 2002	100	60 / 60	plus	ABC04006 ABC41313
MLOC	MLOC_16363.1	1417	2e-24	1331 - 1390	100	60 / 60	plus	ABC04006
JLOC1	JLOC1_11263.1	1672	8e-25	1331 - 1390	100	60 / 60	plus
Harvest21	ABC04006	2006	3e-25	1927 - 1986	100	60 / 60	plus	ABC04006
Harvest35	U35_15913	2006	3e-25	1927 - 1986	100	60 / 60	plus
Harvest35	U35_4842	615	3e-25	538 - 597	100	60 / 60	plus

Contig Sequence (2006 bp)

>U35_15913 2006 Hv_44K_v2
GGCCACTGCTCGTTCACACCCGCTCCACTCGTCCGCGCTCCTCCCCCTCCCCGCAGCCCC
GACGTGATCCCGTCGTGGATGCAGCCGCGTGGGAGGTCGTTCAACCGCCGCTCCCGCAGC
TTCTCCCGCGCCCGCCTCGCCGTCGAGGGATCCTAATCTCGCCCGCCTCCCGTAACGAAC
AACCATCCCATCTGATAAATTCACGCGGAACAGCCCGCCGTTAACAGCCACGGGAACTAA
GATGGACGCCGCCGCCGCCGCCGCCGCTGCCGCCGACGCAGTCGTTGCCAACGGGGTGCT
GGCGAAGCTGGAGGAGGAGAGGGAGGCGCAGAAGAGGTACTGGGAGGAGCACTCCAGGGA
CCTCACTGTTGAGGCCATGATGCTCGACTCCCGTGCCGCCGATCTGGACAAGGAGGAGCG
CCCCGAGATACTGTCTTTACTTCCTTCATATGAAGGAAAATCAGTGCTGGAGCTTGGCGC
GGGAATAGGTCGCTTTACTGGAGAACTGGCTAAGACAGCTGGGCATGTTCTTGCAATGGA
TTTCATTGAAAGTGTGATTAAAAAGAATGAAAGCATAAATGGCCATTACGAAAATGCATC
CTTCATGTGTGCTGATGTTACATCTCCAGACCTGGTGATTGAGGACAACTCGATTGATCT
CATATTTTCAAACTGGCTACTGATGTATCTTTCAGACGAGGAGGTCGAGAAGCTTGTAGA
AAGAATGGTTAAATGGCTCAAAGTTGGTGGCCATATCTTCTTTAGAGAATCATGCTTCCA
TCAATCTGGAGACTCAAAAAGGAAAGTGAATCCGACACATTATCGTGAACCAAGGTTTTA
CACTAAGGTATTTAAAGAGGGCCATGCCATTGATCAGAGTGGGAGCTCCTCTGAACTTTC
TCTGCTTACTTGCAAGTGTGTTGGAGCTTATGTGAAGAACAAGAAGAATCAAAACCAGAT
ATGTTGGCTATGGCAAAAAGTCAACTCAACAGAAGATCGGGGGTTTCAAAGATTTTTGGA
TAATGTGCAGTACAAAACCAGTGGAATATTACGCTATGAGCGTGTTTTTGGGCAAGGTTT
TGTGAGCACTGGTGGAATTGAGACTACAAAAGAATTTGTGGACTTGCTGGATCTTAAACC
TGGGCAGAAGGTGCTTGATGTTGGATGTGGAATCGGGGGTGGTGATTTTTTTATGGCCGA
AAACTATGATGTTCATGTTGTTGGCATTGATCTTTCCATAAACATGGTTTCATTTGCACT
CGAGCATGCTATTGGACGCAAGTGCGCAGTCGAGTTTGAAGTTGCTGATTGCACCACGAA
GACATACCCAGACAATACATTTGATGTTATCTACAGCCGTGACACCATCCTTCACATACA
AGATAAACCCGCTTTGTTTAGAAGTTTCTTCAAATGGCTAAAACCTGGTGGTAAGGTCCT
AATCAGCGATTACTGTAGGAGTCCAGGAAAACCATCTGAAGAGTTTGCGTCATACATTAA
GCAGAGGGGTTACGACCTTCATGATGTAGAGACTTATGGACAGATGCTAGAGAATGCTGG
TTTCCATGATGTCATTGCCGAAGACCGCAGTGATCAGTTCCTGAAAGTTTTACAGAGGGA
GCTAGCCGAAGTTGAAAAGAACAAAGATGATTTTCTAGCCGACTTTGGTCAGGAGGACTA
TGACGATATTGTGACTGGGTGGAACGCGAAACTTCAGAGGAGCTCTGCTGGTGAGCAGAG
GTGGGGGCTGTTCATTGGGACCAAGTGATGGCCCAGATCTGTGGGTGTCTGCAAGCAAAT
AAAGTGGCTTCATTTCATGTGGCCTTTTTCATAATTTGGTTTTGCAATTGATATTTACCT
ATCCTATTTCTCGGTGATTCGGGAAAGCTGGTTATCACGGTCCTGTATTGATTCGATTAT
GCGTGATACTGATATATTCCGCCTATGTTTGAAGTAAATAAAAAACCACTTTGTGGCTTT
GGTACCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g50030.1	500	protein\|CPuORF25 - conserved peptide uORF-containing transcript, expressed
Brachypodium v1_2	Bradi2g47290.1	503
Arabidopsis v10	AT3G18000.1	491	\| Symbols: NMT1, XPL1, PEAMT \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:6154578-6157331 FORWARD LENGTH=491