barSeed - Barley Seed Development Database

Probe CUST_25203_PI390587928

Source Contig U35_15914

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25203_PI390587928	Hv_44K_v2	GCTGGGCATGTTCTTGCAATGGATTTCATTGAAAGTGTGATTAAAAAGAATGAAAGCATA	501	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28803.1	235	2e-24	22 - 81	100	60 / 60	minus	ABC04006
MLOC	MLOC_28803.2	251	2e-24	22 - 81	100	60 / 60	minus	ABC04006
MLOC	MLOC_8530.1	1538	2e-24	1186 - 1245	100	60 / 60	minus	ABC04006
MLOC	AK366322	2002	7e-23	534 - 593	98	59 / 60	plus	ABC04006 ABC41313
MLOC	MLOC_27545.1	469	7e-23	204 - 263	98	59 / 60	minus	ABC04006
MLOC	MLOC_27545.2	432	7e-23	131 - 190	98	59 / 60	minus	ABC04006 ABC41313
JLOC1	JLOC1_19270.1	251	8e-25	171 - 230	100	60 / 60	plus
JLOC1	JLOC1_5669.1	1550	8e-25	294 - 353	100	60 / 60	plus
JLOC1	JLOC1_18594.1	621	4e-23	222 - 281	98	59 / 60	plus
JLOC1	JLOC1_53398.1	678	6e-21	45 - 103	97	57 / 59	plus
Harvest21	ABC04007	577	3e-25	502 - 561	100	60 / 60	plus
Harvest21	ABC04006	2006	3e-25	518 - 577	100	60 / 60	plus	ABC04006
Harvest21	ABC04005	485	2e-22	313 - 372	97	58 / 60	plus
Harvest35	U35_15914	577	3e-25	502 - 561	100	60 / 60	plus
Harvest35	U35_15913	2006	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_15914 577 Hv_44K_v2
GACTGCTCGTTACACCCGCTCCACTCGTCCGCGCTCCTCCCCGCAGCCCCGACGTGATCC
CGTCGTGGATGCAGCCGCGTGGGAGGTCGTTCAACCGCCGCTCCCGCAGCTTCTCCCGCG
CCCGCCTCGCCGTCGAGGGATCCTAATCTCGCCCGCCTCCCGTAACGAACAACCATCCCA
TCTGATAAATTCACGCGGAACAGCCCGCCGTTAACAGCCACGGGAACTAAGATGGACGCC
GCCGCCGCCGCTGCCGCCGACGCAGTCGTTGCCAACGGGGTGCTGGCGAAGCTGGAGGAG
GAGAGGGAGGCGCAGAAGAGGTACTGGGAGGAGCACTCCAGGGACCTCACTGTTGAGGCC
ATGATGCTCGACTCCCGTGCCGCCGATCTGGACAAGGAGGAGCGCCCCGAGATACTGTCT
TTACTTCCTTCATATGAAGGAAAATCAGTGCTGGAGCTTGGCGCGGGAATAGGTCGCTTT
ACTGGAGAACTGGCTAAGACAGCTGGGCATGTTCTTGCAATGGATTTCATTGAAAGTGTG
ATTAAAAAGAATGAAAGCATAAATGGCCATTACGAAA

Homology of Contig U35_15914 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g50030.1	500	2e-51	protein\|CPuORF25 - conserved peptide uORF-containing transcript, expressed
Brachypodium v1_2	Bradi2g47290.2	392	1e-58
Arabidopsis v10	None