barSeed - Barley Seed Development Database

Probe CUST_25198_PI390587928

Source Contig U35_15919

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25198_PI390587928	Hv_44K_v2	CTGCTGCCAGCAAAGTCTAGTTTTCAAATGTAAAGCTAGATAAATAAATCCATGGTTTTC	924	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10669.2	1382	2e-24	1304 - 1363	100	60 / 60	plus	ABC15553
MLOC	MLOC_10669.1	2015	2e-24	1948 - 2007	100	60 / 60	plus	ABC15553 ABC18116
JLOC1	JLOC1_6998.1	2196	8e-25	1878 - 1937	100	60 / 60	plus
Harvest21	ABC15553	610	3e-25	531 - 590	100	60 / 60	plus	ABC15553
Harvest35	U35_15919	1004	3e-25	925 - 984	100	60 / 60	plus

Contig Sequence (1004 bp)

>U35_15919 1004 Hv_44K_v2
GGAAGCTCACATCACTCGATGAAGATGTGCTGGTGACCTGTGGTGAGATTCACCACCCAA
GCAAAGGCCACCGTGGCGTGGGAACCCTAGCCAACGCCCAAGCCTTCACCGATGGACTCT
TGAGCAAAGTGCTTGGCGGCGGTAACTCGGACCCGCTCGCCACGAGTGCTGTCGGCACCC
CGCACCGTCCCAACGCTGATCTCAGCGTCTACATCTTCGAACTATTCAACGAGAACAACA
AGCCTGAAGACGAGCAGGACTTCGGCTTGTTCTACCCCAACGAGCAGCCCGTGTACCCGG
TCGACTTCGTCCATGGCGGCGCCGGCACCGGTGAAAGCTACTGCGTGGCCAAGGCCACGG
CCGGGGACGCAGCCTTGCAGGCTGCGCTGGACTACGCGTGCGGCCATGGGGCGGACTGCG
GCGCCATCCAGCCAGGGAAGCCTTGCTACGAGCCCAACACCAAGCTAGCGCACGCGTCCT
ACGCCTTCAACGACTACTACCAGAAGAACGGCCGGGCCAGCAGCGCCTGCGACTTCGGCG
GTGCCGGCACCATTGTCAACCAGGCACCATCAGGCCGCTGCGACGCGAGCTCGAGCTGGT
GCGTGGCGAACTCGGCGGTGGGTGCCGAGCGGCTGCAGAAGGCGCTGGACTACGCATGTG
GCCACGGCGCGGACTGCACGGACATCCAACCTGGAGCACGGTGCTTCAATCCTGACACCA
AGGTCGCGCATGCGTCCTTCGCGTTCAACGACTATTACCAGCGCCGTGGCAGGGCCGCCG
GAACGTGCGACTTCGCCGGTGCCGGTACCATCGTCCGGCAGGCACCAAAGATAGGCAACT
GCGTGCTGCCGTCAAGGGCCTGAAATGAAGAAACTGTAGCCAAGGGGAAGCTAGCTTTAG
TACCACGAGACTACAGATTATCCTCTGCTGCCAGCAAAGTCTAGTTTTCAAATGTAAAGC
TAGATAAATAAATCCATGGTTTTCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15919 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35520.1	562	4e-93	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g25517.1	563	7e-107
Arabidopsis v10	None