barSeed - Barley Seed Development Database

Probe CUST_25197_PI390587928

Source Contig U35_15920

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25197_PI390587928	Hv_44K_v2	GTACGTGTACTCCGAATACCCTAGCTACGTATGTAATCAAGTAAATAAGTATTCTCTTTT	1524	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249411.1	1763	2e-24	1585 - 1644	100	60 / 60	plus	ABC08262 ABC13846 ABC18116 ABC39372
MLOC	AK360533	1294	2e-24	1196 - 1255	100	60 / 60	plus	ABC08262 ABC39372
MLOC	MLOC_23444.1	625	2e-24	446 - 505	100	60 / 60	plus	ABC08262 ABC39372
JLOC1	JLOC1_16198.1	777	8e-25	439 - 498	100	60 / 60	plus
Harvest21	ABC08262	1611	3e-25	1495 - 1554	100	60 / 60	plus	ABC08262
Harvest35	U35_15920	1740	3e-25	1525 - 1584	100	60 / 60	plus

Contig Sequence (1740 bp)

>U35_15920 1740 Hv_44K_v2
TGGTGGCCTACTACCGATCTCGTTGCTGTGTAGCATAGCAGCTCCAAGTTAGGAGAGCAT
GCATGGCACTCCCTAAGCTGCTGCTCCTCCTCCTCGTTGTGGGCGGTGCACTGTCACTCA
CCTTCTTCCCCGGTTCAGAGGCCGGCGATGTGGGGGTGTGCTACGGGATGATGGGTGACA
ACCTGCCACAGCCGCCGGCGGTGGTGCAGCTGCTGAAGCAGCACGGCATCACGATGGTGA
GACTGTTCAACGCAGACGCCGGTGGGCTCCGGGCGCTGGCCAACACCGGCATCAAGGTTG
GGGTGTCGCTGCCCAACGACAACGTAGCAGAGGCGGCGAGCAGCATGTCGTACGCGGTGC
GGTGGGTGCAGAGCAACGTGCAGGCGTACCCGGGCACGTGGATCGACAGCGTGTCCGTCG
GGAACGAGGTGTTCCACCAGGCGCCATGGCTGACCCATCAGCTCCTCCCGGCCATGAAGA
ACATCCAGGCGGCGCTGGCCGGCGCGGGCCTGGGCGACGCCGTGAAGGTGGTGACGCCGA
TCGCCATGGACGCGCTCAAGGTGCCGTCGTTCCCGCCGTCCGTGGGGGAGTTCCGGGACG
ACCTGGCGTGGTCGGTGATGAGGCCCATGGTGGATTTCCTGGAGCAGACCGGCTCGCACC
TCACCTTCAACGTCTACCCCTACTTCGCCTACAAGTACGATTCCCATGTCGACCCCGACT
TCGCCTTCTTCCGCCCCAACAACGGGCAGCACGACCCGGGCACCGGCCTCACCTACTTCA
ACCTGTTCGACGCCATGGTCGACGCCGTGTTCCATGCCGTGGAGAAGCTGGGCAACTCCG
GCGGGCGCACTCGCGGCAGGAGGCGCGGTGGTGTAACCTCGACGATGGGGGTACCAGAGT
CGGGTGCCCCGGCCGGCAAAGGCAAAACGGGGGTAGCATTGGCGGGCTCGGCTTCGACGG
AGAACGCCCGGGCGTACAACTCCAACCTCATCAGCAAGGTTCTGAGAGGCGCCGGCACGC
CGTACAACCCCGACGCCGACATCTCGGTCTACATCTTCTCCCTTTTCAACGAGAACCTCA
AGCCCGGCGACGACGACGAGCGCAACTTCGGCCTCTTCTACCCCAACGGCACGCAGGTGT
ACGACGTGGACTTCACGCGCCCTGGCCCCGAGCCCGAGGGGCCTAGCTGGTGCGTGGCCA
ACGCGGCGGTCGGGGACGGGCGGCTCCGGGACGCGCTGGACTACGCGTGCGGCCACGGGG
CGGACTGCAGCGGCATCCAGCCCGGCGGGTGGTGCTTCGACCCCAACACCATGGTCGCGC
ACGCCTCCTACGCCTTCAACGACTACTACCAGCGGAACGGCCGGTCCGAGGAGGCCTGTC
GCTTCGGCGGCTGCGGCTCCGTCGTCCACCAGCAGCCCAGGTTCGGCAACTGCGTGCTGC
CGCAATGGCGTGACGGACTCAAGCGGTTGGGAGGACCGCCGTACGTGCAGCTATCGCAAG
ACCTCTAGCTATGCGATGAACTCCGTACGTGTACTCCGAATACCCTAGCTACGTATGTAA
TCAAGTAAATAAGTATTCTCTTTTTTTCCCACAAAAAGAAATAAAAATAAGTACACTTTC
TGTGAAAAAAAAAAAAAAATGTTTTTATATTATATAAACGGAGGTTGTACGATGGAGTAA
AAATATAAATTACATTCTCGGCGGTCACAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAA

Homology of Contig U35_15920 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35350.3	456	3e-141	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g57610.1	496	3e-139
Arabidopsis v10	AT2G05790.1	472	2e-122	O-Glycosyl hydrolases family 17 protein \| chr2:2199450-2201293 FORWARD LENGTH=472