- Probe CUST_2513_PI390587928
- Source Contig U35_26267
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2513_PI390587928 | Hv_44K_v2 | ACCTGAACAGCTTTGCATGCAAGAGCCTTAAATATAACCATCCCAAAACAGAGGTTCGAA | 577 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.593 | 1.402 | 1.247 | 0.660 | 0.562 | 0.444 |
| Raw | 668.504 | 750.168 | 702.685 | 515.961 | 172.489 | 152.301 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11952.4 | 2486 | 2e-24 | 1744 - 1803 | 100 | 60 / 60 | minus | ABC15470 ABC48549 |
| MLOC | MLOC_11952.2 | 2581 | 2e-24 | 1883 - 1942 | 100 | 60 / 60 | minus | ABC15470 ABC48549 |
| MLOC | MLOC_11952.1 | 2570 | 2e-24 | 1835 - 1894 | 100 | 60 / 60 | minus | ABC15470 ABC48549 |
| MLOC | MLOC_11952.3 | 2528 | 9e-22 | 1790 - 1844 | 100 | 55 / 55 | minus | ABC15470 ABC48549 |
| JLOC1 | JLOC1_7976.1 | 2615 | 8e-25 | 681 - 740 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26598 | 640 | 3e-25 | 578 - 637 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26267 | 640 | 3e-25 | 578 - 637 | 100 | 60 / 60 | plus |
Contig Sequence (640 bp)
>U35_26267 640 Hv_44K_v2 CTACGCGCATACCGCTCCGCCAAGGTCGACGACGTGGACTACACGCTCGGCGACGACGTC TACGTCATGGCTGGGGAAAATGAGGCAGATTACATTGGCCGAATAACTGAGTTTTTTGAG GGTGTTGACAAGACCAACTACTTCACATGTCGCTGGTTCTTCCGTCCAGAGGACACGGTG ATATCTAGAGCCAAATTTGTCAATGATCACACCCATGACCCAAAGCGTGTCTTTCTCTCT GAGGAAAAGAATGATAATCCACTTGATTGCATCATATCAAAGGTCAAGATAATCCATGTT GATCCAAATACGGATTCAGTGACCAAGGCCAAACTGGTGGCTGGCACTGACTTGTACTAT GACATGTCATACTCTGTTGCTTATTCTACATTTGCTAACATCCCATCAGACACCACCGAG AACTCTGGTATTTCTACTGATGCTGATTCAGAGAATGGGACCCCAGTAAAAACAGCATCC CTCCTTGATCTGTATTCTGGTTGTGGTGGGATGTCAACAGGGCTGTGCTTGGGTTCAGCG CTTGCTGGCCTGAAACTTGAAACTAAATGGGCTGTTGACCTGAACAGCTTTGCATGCAAG AGCCTTAAATATAACCATCCCAAAACAGAGGTTCGAAATG
Homology of Contig U35_26267 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g12570.1 | 1788 | 3e-78 | protein|expressed protein |
| Brachypodium v1_2 | Bradi3g21450.2 | 895 | 5e-120 | |
| Arabidopsis v10 | AT1G80740.1 | 791 | 6e-53 | | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:30342394-30346831 FORWARD LENGTH=791 |