barSeed - Barley Seed Development Database

Probe CUST_2512_PI390587928

Source Contig U35_26268

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2512_PI390587928	Hv_44K_v2	TGTCCAACGGGGTGTACTCGTCCAACTTCCCCGCCGTGCCCAAGTCGCCGTTCAACTACA	282	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61206.1	2443	2e-24	839 - 898	100	60 / 60	minus	ABC18447 ABC18746 ABC46355
JLOC1	JLOC1_39995.1	2407	8e-25	1459 - 1518	100	60 / 60	plus
Harvest21	ABC22564	445	3e-25	283 - 342	100	60 / 60	plus
Harvest35	U35_26268	446	3e-25	283 - 342	100	60 / 60	plus

Contig Sequence (446 bp)

>U35_26268 446 Hv_44K_v2
ACCTCCCGCTGCTCAGGCCGACCCTGCCCCAGATCAACGACACGAGCTTCGTCTCCAATT
ACACCGACGAGCTCCGGAGCCTCGCCACGGAGGAGTACCCGGCGGCGGTGCCGCAAGAAG
TGGACAGGCGGTTCTTCTTCACGGTGGGGCTGGGCACCCACCCCTGCGCCGTCAACGGGA
CGTGCCAGGGGCCGACGAACGACAGCCGGTTCGCGGCGGCCGTGAACAACGTCTCCTTCG
TGCTCCCCACGACGGCGCTGCTGCAGTCGCATTACACGGGGATGTCCAACGGGGTGTACT
CGTCCAACTTCCCCGCCGTGCCCAAGTCGCCGTTCAACTACACGGGCACGCCGCCGAACA
ACACGAACGTGTCCAACGGGACCAGGCTGGTCGTGCTGTCGTACGGCGACGCCGTGGAGC
TGGTGATGCAGGGCACCAGCATCCTC

Homology of Contig U35_26268 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62490.1	578	2e-84	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g54690.1	579	5e-84
Arabidopsis v10	AT5G60020.1	577	4e-59	\| Symbols: LAC17, ATLAC17 \| laccase 17 \| chr5:24168072-24170223 FORWARD LENGTH=577