barSeed - Barley Seed Development Database

Probe CUST_25110_PI390587928

Source Contig U35_14699

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25110_PI390587928	Hv_44K_v2	TATCATCCCTGGTTTGTACGGCTGATGACACTTATTCCATTGCACATCATCATCGTCAAA	811	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34901.1	695	2e-23	547 - 604	100	58 / 58	plus	ABC01287
JLOC1	JLOC1_22550.1	605	1e-23	440 - 497	100	58 / 58	plus
Harvest21	ABC01287	885	3e-25	812 - 871	100	60 / 60	plus	ABC01287
Harvest35	U35_14699	885	3e-25	812 - 871	100	60 / 60	plus

Contig Sequence (885 bp)

>U35_14699 885 Hv_44K_v2
GGGAAACCCTCGCCGCCGCCTCGTCCTCCCTCTTCTTCTATTCCTCTTCGGCGGCGGCTT
CAGACAGACCTCGCTAGCTAGGGTTTCGGGCGGCGGAAGGAAGATGAGCCGCAGCCTGGG
GATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGAC
CGGCGAGGTCTACCGGGGCTCCATGATCGAGTGCGAGGACAACTGGAACTGCCAGATCGA
GAACATCACATTCACAGCAAAGGACGGCAAGGTGTCGCAGCTGGAGCACGTCTTCATCAG
GGGCAGCAGGGTCAGGTTCATGATCATCCCCGACATGCTCAAGAACGCCCCCATGTTCAA
GCGCCTAGAGGCCAGGATAAGGGGCAAGGGGTCGGCCATCGGCGTCGGGCGCGGCCGCGC
TGTTGCCATGCGTGCCCGGGCTGCTGGTGGACGTGGTGGTGGTCCCCCTGTTGGAGGAGG
ACGGGGTGGCGCGCCTCCCGTGAGGAGGTAGATGATGTGAGCCGATCCACTGTGTGGTTG
AGGAAGGAAGTTGCTGTCTTTACTAGCGAAGTGAAACAAACTGCTGCGGCGGCCATGCTT
GTGAGCTTTGTGATGTGCCTCTAGTTTAGTTTGTTGGTTTCTGCGAACCGATTTTCTCTA
TGTATGATGATGATGTATTGCTGTTGTTAGGTGTAAACATGAGACTTGATGGTTCGTTGG
AGGCTGTGTCATTGCAATGGATTATCTCTTGTGAAGCTTACTGCTAGTTAATATGTGTTG
AACTATGACCATGATATAATCAAGTAGACCGTATCATCCCTGGTTTGTACGGCTGATGAC
ACTTATTCCATTGCACATCATCATCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01250.1	133	2e-62	protein\|LSM domain containing protein, expressed
Brachypodium v1_2	Bradi3g00420.1	135	1e-63
Arabidopsis v10	AT1G20580.1	131	3e-56	Small nuclear ribonucleoprotein family protein \| chr1:7128979-7130371 FORWARD LENGTH=131