barSeed - Barley Seed Development Database

Probe CUST_2510_PI390587928

Source Contig U35_38241

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2510_PI390587928	Hv_44K_v2	ACAATTCGAACTACTATCTCAACTTTTTAGTCTCTGCAGTGTCAAATGTCCACTCCCAAC	466	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18964.2	815	2e-24	325 - 384	100	60 / 60	plus	ABC00026 ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
MLOC	MLOC_18964.1	615	2e-24	325 - 384	100	60 / 60	plus	ABC00026 ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
JLOC1	JLOC1_13138.1	617	8e-25	325 - 384	100	60 / 60	plus
Harvest21	ABC34126	648	3e-25	467 - 526	100	60 / 60	plus
Harvest35	U35_38241	648	3e-25	467 - 526	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_38241 648 Hv_44K_v2
CCGGAAGGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCAATCCGTCGCCTGGC
CCGGCGGGGAGGCGTGAAGCGCATTTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCCT
CAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCG
CAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGACGCACCCTCTA
CGGGTTCGGAGGCTAGGCCACCAACCAGATTAGAGTGTCTAGGGTTCGTGGTCGTTGGTT
TAATCGCAGCATCTCGCTGTTGTTTGCTATCTTCTGTAGGATCGAATGGAATGGAATGGA
AATTGCTAGTTCATTGTTGAAATCTGTTGAGCCTGTTAAATTCCCCATATACTGTCTGTC
TCTCAGCCTTTCTGTGCTCGAATCGGTTTTGTTTGTTCTGGTTCATACAATTCGAACTAC
TATCTCAACTTTTTAGTCTCTGCAGTGTCAAATGTCCACTCCCAACCCTATCCAAGTTCC
AAATCCGTCCAGTGAGGGCTTGCAGGCACCGATCCACCCCGTTGCAGCAGCGGCGGCAGA
GGTCGCGTTGCCGCTGATAACAGAGTAGGAGACAGGTGATCGCGCTGG

Homology of Contig U35_38241 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g39410.1	104	1e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g19360.1	104	5e-52
Arabidopsis v10	AT5G59970.1	103	6e-52	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103