barSeed - Barley Seed Development Database

Probe CUST_25068_PI390587928

Source Contig U35_38663

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25068_PI390587928	Hv_44K_v2	GCTGATGTAACTGCATTTTAGGTTTTCTATCTGTTCAGTGCCATATTTGTGAAACTCAAA	14	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.648	1.947	1.091	0.849	0.353	0.316
Raw	569.966	1053.785	513.508	644.016	91.231	89.521

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_28350.1	1105	4e-23	990 - 1046	100	57 / 57	plus
Harvest21	ABC34542	757	3e-25	15 - 74	100	60 / 60	minus	ABC34542
Harvest35	U35_38663	757	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (757 bp)

>U35_38663 757 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAGTTTCACAAATATGGCACTGAACAGATAGAAAACCTAAAAT
GCAGTTACATCAGCAGAAAGTGGATGGTTCTCACGACGGCAATACATCATGCAATAACAC
ACAGAACTTGCAAAACTACATTAAAAGTAATAGTTGCTGCTGCAAAGAATACAAGGTAAC
ACAAGTAGAACAACCACAACATAGTCATCTCCTCGAGTCTTACAGTTCCTATAATAACAA
GCTGACCGTAAACAGATAAAGTTAAAATAGCCCATGAGAGTGAAGTCGACGTATTCCTCA
TGAGCCACAGCAAGCAGATTTCTGAGATTCTGGGTTTTCGGAACCTTCTGTCTTGTTGAT
CTTGATCGTCCGGTCCTCAGGCTTGGAATCAGTCTCAGCAAGTCTCTGCTTAATATCCAG
GGCAATGGAAAAGAAAACTTGCTCCACGTTAAGGTTTGTCTTCGCACTAGTTTCAAAGAA
CTGGATGCCATATTCGTCGGCTAGTGCTTGTCCCTTTGCAGTAGAAACAGCCCTTTTACT
CTCATCCATATCAGCCTTGTTGCCTATCAAAATTTTGTTCACATTATCAGAGGCATGTTG
CTCAATGTTGCGTATCCAGTTCCGTATGTTGTTGAAAGATGACTCATCCGTGACGTCATA
AACAAGCAAGATTCCCATGGCTCCCCGGTAGTATGCTGTCGTGATAGTCCTGAATCGCTC
TTGACCAGCTGTATCCCAAATTTGCAACTTAATGCGC

Homology of Contig U35_38663 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g13530.1	216	6e-92	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g54460.2	217	8e-98
Arabidopsis v10	AT5G59840.1	216	1e-85	Ras-related small GTP-binding family protein \| chr5:24107450-24109049 REVERSE LENGTH=216