- Probe CUST_25064_PI390587928
- Source Contig U35_38667
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25064_PI390587928 | Hv_44K_v2 | TTTCCTCGTTGCATCAATTTATCTGTATGGATCTAATATTTGTGTTTGGAAACATCCTCC | 17 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.960 | 2.016 | 1.273 | 0.583 | 0.141 | 0.164 |
| Raw | 286.012 | 472.002 | 255.623 | 187.193 | 16.227 | 20.161 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37433.2 | 1806 | 2e-24 | 1663 - 1722 | 100 | 60 / 60 | plus | ABC21200 ABC34548 |
| JLOC1 | JLOC1_24242.1 | 1738 | 8e-25 | 1660 - 1719 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34548 | 595 | 3e-25 | 18 - 77 | 100 | 60 / 60 | minus | ABC34548 |
| Harvest35 | U35_38667 | 595 | 3e-25 | 18 - 77 | 100 | 60 / 60 | minus |
Contig Sequence (595 bp)
>U35_38667 595 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGAGGATGTTTCCAAACACAAATATTAGATCCATACAGATAAA TTGATGCAACGAGGAAAATCAGCACAAGCAAGTCATTGCAGATAAGAATAAAGACTTCTG TGGATCTCTTCTAAAACGAATAGAAAGATTTTCAATAAGTATCACAGCACAGGGCAAGCT TAACTAATACCTTATTAAACTAGTTTAACCACTACTTTAACTTGCACTTTTTGTTCTATC ATGCTAACAGAGGAACTGAGTAAAACAGGCCATGGTGAAATTTGGCATGCATCAGTAAAA GCCTGACCTACGAATTTTATTTTTCAGTCTCATGCTCCACTTCACACTCCTCTTCTTCTG ATATTGCTTCTTCCTCATCAGTTTCAGCTCTTAATTCACTGTCTTTTGTCCTATCAGGCA TCCTCAAACCCTTTCGGGGGTAGTACTTCTTCCGCCCGAGCACAACAATCTTGGCAGCCT CCTCCACCCTTGATACATCTACCAAAGCATTCACTACATCCTGCAGCACACCACACTCCA CTCTAAGGTTCCTTTTATCACTAAAGATTTTATAACAGTACGTCAATGCACAATC
Homology of Contig U35_38667 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |