barSeed - Barley Seed Development Database

Probe CUST_24993_PI390587928

Source Contig U35_27479

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24993_PI390587928	Hv_44K_v2	GTGGATTTTACTGCATTTGTGTTGAACCGTTTTGCAATCAGCCGATGGCCGTATCTCTTC	771	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356033	1912	2e-24	1788 - 1847	100	60 / 60	plus	ABC04922 ABC16516 ABC22503
MLOC	MLOC_80006.1	1921	2e-24	720 - 779	100	60 / 60	minus	ABC22503
Harvest21	ABC22503	874	3e-25	44 - 103	100	60 / 60	minus	ABC22503
Harvest35	U35_27479	874	3e-25	772 - 831	100	60 / 60	plus

Contig Sequence (874 bp)

>U35_27479 874 Hv_44K_v2
CGAGGAGTGGCTGCAGGGCTGCATGGAATCAAGAGGCTTATCTCAGATGGTACTAAGTGA
CATCGATTTGCATATGGCTGCTCTTGCATTGGAGTTGTGTTCCCAATAATGGTTGACAGA
AGATCCATTAAAAACGTCGGTTTAGCTGTGAGACATACAATTTTGCATGACACCCTTGTT
TTCATCAGGAGCGCTATGTTGCAAGGACAAGCAGTACAGATTGATGTTGGATTATCTATT
ATGGCAGTGACATCTATTTGCATATGGCTGCTCTTGCATTGGAGCTGTGTTCCACAATAA
TGGTTGACAGAAGATACATTAAAAACGTCATACAGTTTTGCATGACACCCTTGTTCTGAT
CAGGAGCGCTATGTTGCAAGGACAAGCAGTACAGCTTGAATGAGAGAGAGATAGAGGCAG
GTGCACCTGGACACGAGGAGATGTGACTAACACAGCCAACACAGTTTGGAAGTCCTCCGG
TGATGGATTCGGCAGCAGCAGATGGGTTGAAGGCCTCTGGCGATGGATGCGATAGTACGA
GGTGGAGCCGGCGAGGGATGCAACACCATGCGGGGCAAGGTCTGTACCGGCGAGGGATGC
AACACCACATGGGGCAAGGTGGTGCTCTGTAGTGGCGACAGAGGCAGCACCTCTGTAGCG
GCGTGGTGGTGCTCGGCGACAGAGGCAGCACCAAGCGCGGCAAGTCGTGCCCTGGTGAGC
CGTAGCTGCATGGAGGGTTTGGCTTGGAACTGCCAGGACGTGCGTGCGTTAGTGGATTTT
ACTGCATTTGTGTTGAACCGTTTTGCAATCAGCCGATGGCCGTATCTCTTCGGCTTGTTG
ACCGTCCGAGGTGGGGAACGGTTATTTAGTAAGA

Homology of Contig U35_27479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None