barSeed - Barley Seed Development Database

Probe CUST_24938_PI390587928

Source Contig U35_41793

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24938_PI390587928	Hv_44K_v2	CACATTGCTATTCTTAAAGTTCTGAATCTTGAAAGCGTTGCCCAGGAGCCGAAGTTGGAC	85	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367678	2341	7e-23	957 - 1016	98	59 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
MLOC	MLOC_43777.3	2372	7e-23	968 - 1027	98	59 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
MLOC	MLOC_43777.5	2020	7e-23	1036 - 1095	98	59 / 60	plus	ABC05196 ABC05866 ABC12347
MLOC	MLOC_43777.4	2547	7e-23	1041 - 1100	98	59 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
MLOC	MLOC_43777.2	2423	7e-23	1061 - 1120	98	59 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
JLOC1	JLOC1_28312.1	2540	4e-23	1010 - 1069	98	59 / 60	plus
Harvest21	ABC37009	266	3e-25	86 - 145	100	60 / 60	plus
Harvest35	U35_41793	266	3e-25	86 - 145	100	60 / 60	plus

Contig Sequence (266 bp)

>U35_41793 266 Hv_44K_v2
ACTACGCGAAACCCCGGGCTGCAGGTTTCATCGATGTNATGTTTCGAAATTAGGCATATT
CCTTTGCTGTAAGGGACCAGAAANACACATTGCTATTCTTAAAGTTCTGAATCTTGAAAG
CGTTGCCCAGGAGCCGAAGTTGGACGAATGGGTGGCAAGGGCTACTTTATACGACACCCT
ACAGGATGAAGTGAGGATTGCCATGGGTGGGGGGGGCACTGGTCTTTCTGTTTTTTACCT
TTCTGCGNTAAAGGCGAGATGATCAT

Homology of Contig U35_41793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None