barSeed - Barley Seed Development Database

Probe ABC05866

Source Contig ABC05866

barSeed

Links

Affymetrix Source Sequence (2342 bp)

>ABC05866 2342
GATCGATCCTTACCTCAACACTGATGCTGGGACTATGTCCCCGTTTGAACACGGTGAAGT
GTTTGTGTTAGATGATGGTGGTGAGGTGGACTTGGATCTTGGGAATTATGAGAGGTTTCT
TGATATTAAACTCACCCGGGACAATAATATAACTACTGGAAAGATCTACCAGTCTGTTAT
TGACAAGGAGAGGAAAGGGGAATACTTGGGAAAGACTGTGCAGGTTGTGCCACACATTAC
AAATGCCATACAAGACTGGATCGAGCGTGTTGCTATGATACCGGTGGACGGCATGGACGG
ACCAGCTGATGTCTGTGTGATCGAACTCGGCGGAACAATTGGTGATATCGAATCTATGCC
ATTTATTGAAGCTTTGGGTCAATTCTCGTATCGTGTTGGACCTGGTAACTTCTGTCTGGT
GCATGTCAGTCTTGTTCCAGTTCTGAATGTTGTTGGTGAACAGAAAACCAAGCCGACTCA
ACACAGTGTGCGTGGTTTAAGGGGACTTGGCCTCACCCCAAATATTTTAGCTTGTCGCAG
TACAAAAGAACTGGAAGAAAATGTGAAAGAGAAACTGTCTCAGTTTTGCCATGTGCCGGC
AGCAAACATTCTCACTCTGTATGATGTTTCCAATATTTGGCGTATTCCTTTGTTGCTACG
GGACCAAAAGGCGCATGAAGCTATTCTTAAAGTTCTGAACCTTGAAAGCTTTCCTCGTGA
GCCAAAGTTGGACGAATGGGTTGCAAGAGCTACTATGTTTGACACCCTTCAGGATACTCT
ACACATTGCTATGGTTGGGAAGTACACTGGTCTATCTGATTCCTACCTCTCCGTGTTGAA
GGCCCTCTTGCATGCTTCGGTTTATTGCCACAGAAAGCTAGTTGTTGATTGGGTTGCTTC
TACAGATCTTGAGGACTCTACCAGAATTGAGGCACCTGATGCTTACAAAGCAGCTTGGAA
TTTACTGAAGAGTGCCGATGGCATTTTAGTACCTGGTGGCTTTGGGGACAGAGGTGTTCA
AGGAAAAATTCTGGCTGCTAAGTATGCCCGTGAAAACAATGTACCATATCTTGGTATATG
TCTTGGAATGCAGATGGCTGTCGTAGAGTTTGCTAGGCATGTCATGAATCTCCCTCATGC
GAACAGTACTGAATTTGACCCCAATGCCAAGACCCCATGTGTTATTTTTATGCCTGAGGG
TTCCAAAACACATATGGGTGGCACAATGCGCCTAGGATCAAGGAGGACATTCTTCAAGGT
TGCTGATTGCAAGTCAGCTAAATTGTATGGCAACGTGGATTATGTCGATGAGAGGCACCG
GCACAGATATGAGGTGAATCCTGATATGGTGCCAGAGTTTGAAAACGCTGGACTCAAGTT
TGTTGGCAAAGATGAGAGTGGCAGGAGAATGGAGATAATCGAGATACCCAGTCACCAGTA
TTTCGTTGGAGCACAATTTCATCCTGAATTCAAGTCAAGACCTGCGAAACCTTCTCCACT
ATTTGTTGGGCTAATTGCTGCCTCATCTGGGCAATTGGACAAGGTGCTGCAGGGTTGCTC
CAATGGCCATGTGGTTCCTGCCAAACATCAATTTAGCAATGGTCTATACACGCTGGCTGC
ACACCAAAATGCTGATGTACACTCAAATGGGCATGCGAAGAAGCTTGCCAATGGTCTAGC
GAATGGAAAATACTATCCGAATGGGAATGGTGTCCATGCCTAGCTAGCTCAAGGATGCTC
TCACCCTTTTACATTTTGCAGTTGTTGCATCAGTTTTGTCGTGGCTGGCTAAGCTACCAT
GGTCGCTCGAGGAAGAAAAAGTTCTGTACTCGATGCGATCTGTCTGCAGGGGATTGTGCT
CGTTCCGTGTTTTTTAGTGAAAGACCGAGCTGGATCTGCGTCAGTGGTTTGCTTGTTCTT
CTCTACCAATTTCTGTAACAAGACAACAGAAGTGGGTAAGAAGAGTCCGTGCTGTATATC
TGAAAAAGGATAGGCTGAACGTTTTAATTGTTTCGTGAGTTGGTGCTGAGATGTAAGCGA
ATTTGGGTGTTCCGCAGTTTGTATTTGGACGCAGTTCTTGTGCTTTTGAACAAATAAGTT
AATGCTTTGTATGATGTATCTGACTGCTTTGTTATAGTGCTTTGTATGGTTTTAAGCATA
TAGGAAAAAATATTAGCATATACTCCCTCCGTCCCAAAAATCTCTTTAGTATTTAGATAC
ACTCATTTTTAGACAAAACTAAGACAAGAATTTTGGGATGGACGGAGTACAACAATAAAT
TAGGTTTATATTAAATTAATAATATAATATATTTTCTGTACCCTTAAAAAAAAAAAAAAA
AA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK369234	2454	0.0	338 - 2454	99	2115 / 2117	None	ABC05865 ABC05866 ABC12347
MLOC_3255.1	1969	0.0	1 - 1900	99	1898 / 1900	None	ABC05865 ABC05866 ABC12347
MLOC_43777.3	2372	0.0	295 - 1870	84	1320 / 1580	CUST_12126_PI390587928 CUST_24938_PI390587928	ABC05196 ABC05866 ABC12346 ABC12347
AK367678	2341	0.0	284 - 1859	83	1319 / 1580	CUST_12126_PI390587928 CUST_24938_PI390587928	ABC05196 ABC05866 ABC12346 ABC12347
MLOC_3255.2	1908	0.0	665 - 1070	100	406 / 406	None	ABC05865 ABC05866 ABC12347
MLOC_43777.4	2547	0.0	284 - 882	86	518 / 600	CUST_12126_PI390587928 CUST_23310_PI390587928 CUST_24938_PI390587928	ABC05196 ABC05866 ABC12346 ABC12347
MLOC_43777.2	2423	0.0	303 - 964	86	569 / 663	CUST_12126_PI390587928 CUST_24938_PI390587928	ABC05196 ABC05866 ABC12346 ABC12347
MLOC_43777.1	2571	0.0	305 - 903	86	518 / 600	CUST_12126_PI390587928	ABC05196 ABC05866 ABC12346 ABC12347
MLOC_43777.5	2020	4e-161	1023 - 1634	84	513 / 614	CUST_12126_PI390587928 CUST_24938_PI390587928	ABC05196 ABC05866 ABC12347
MLOC_1904.1	552	5e-85	3 - 174	100	172 / 172	None	ABC05866