barSeed - Barley Seed Development Database

Probe CUST_24937_PI390587928

Source Contig U35_41794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24937_PI390587928	Hv_44K_v2	CTTCGGCGCCGGGTACTTCCTCTCCCTGCACTCCATCGTGTTCTACCTCTTCGCCAGGCG	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81672.3	596	7e-23	510 - 570	98	60 / 61	minus	ABC16050
MLOC	MLOC_81672.2	1401	7e-23	1315 - 1375	98	60 / 61	minus	ABC16050
JLOC1	JLOC1_54324.1	930	4e-23	27 - 87	98	60 / 61	plus
Harvest21	ABC37014	496	3e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_41794	496	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_41794 496 Hv_44K_v2
GGTTACCCCGCCACGTCCACTCCATTTCCCCTCCCCTGTCACCGTCTCGGACATGGCGGA
GCCACCGCCACCTCCACCCTCGACGCCCATGCCGAAGTCATCGCCGCGGGCGCGGCCGCG
CCACCACCACGCGCCGCCGGGCCTCTGCGCCCTACCCGCCTTCTCTTACAACGCCCACCG
TGGCCTCGTCCTCGGGCTCACCTTCCTCGCCTACGCCCTCTACCACGCCTCCCGCAAGCC
ACCCAGCATCGTGAAGCGCGCGCTCTCCAAGTCCTGGCCGCCCTTCTACGACCCCGCCCT
CCTCGGCGAGACCGACGTCGCGTTCCTCGCCTTCTACTCCCTCGGCATGTTCGGCGCCGG
CCACCTCGGGGATCGCCTCGATCTCCGCCTCTTCCTCGCCGCCGGAATGGTCGGGAGCGG
CGCCCGCCGTCGCCTTCTTCGGCGCCGGGTACTTCCTCTCCCTGCACTCCATCGTGTTCT
ACCTCTTCGCCAGGCG

Homology of Contig U35_41794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43620.1	495	4e-53	protein\|transporter, major facilitator family, putative, expressed
Brachypodium v1_2	Bradi3g50397.1	493	2e-55
Arabidopsis v10	None