barSeed - Barley Seed Development Database

Probe CUST_24911_PI390587928

Source Contig U35_31071

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24911_PI390587928	Hv_44K_v2	GTCGATGGATGTGTGTGTAGTAGTATATATTGTTTCCTTGTGGTTGTAATCATGCAAAAA	229	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25346.1	1173	2e-24	1072 - 1131	100	60 / 60	plus	ABC06007 ABC15484 ABC31215
JLOC1	JLOC1_17334.1	1166	8e-25	1072 - 1131	100	60 / 60	plus
Harvest21	ABC31215	369	3e-25	230 - 289	100	60 / 60	plus	ABC31215
Harvest35	U35_31071	369	3e-25	230 - 289	100	60 / 60	plus

Contig Sequence (369 bp)

>U35_31071 369 Hv_44K_v2
GTTTTGGATTGCCAAGAACTCGTGGAGCAACGACTGGGGCGTCCAGGGATACATCTACCT
CGCCAAGGACGTCTACTGGCCCACGGGCACCTGCGGCCTCGCCACCTCGCCCTTCTACCC
AACAGCTTGATGTTCCACACCCACCGCCATGCCTACGCACGTAGGGCTTTTGCGCGCAAT
ATTCGCTTATGTTAACTGCATCGTTCGGATGGACAGACGGTTAAGAGTGGTCGATGGATG
TGTGTGTAGTAGTATATATTGTTTCCTTGTGGTTGTAATCATGCAAAAATAAATGTACTT
GATCAATAGTATGATGGCTTGAGTGTACTTGATAAAATATAAACTTGCTTCGAAAAAAAA
AAAAAAAAA

Homology of Contig U35_31071 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None